BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0285300 Os02g0285300|AK058613
         (232 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0285300  DREPP plasma membrane polypeptide family protein    234   5e-62
Os01g0233000  DREPP plasma membrane polypeptide family protein     95   4e-20

>Os02g0285300 DREPP plasma membrane polypeptide family protein
          Length = 232

 Score =  234 bits (596), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 123/135 (91%), Positives = 123/135 (91%)

Query: 1   MDYWKTKVLPKIKVVFXXXXXXXXXXXXELIKSFDESKEGINGEFEEKKADLQPKVVEIY 60
           MDYWKTKVLPKIKVVF            ELIKSFDESKEGINGEFEEKKADLQPKVVEIY
Sbjct: 1   MDYWKTKVLPKIKVVFAKGGNAKKAAAAELIKSFDESKEGINGEFEEKKADLQPKVVEIY 60

Query: 61  EAAPAPLKVLIKDRAKVSGIKKNSAAVTKFVDDLAKIEFPGAKQLSEGIAKVGPALLSGP 120
           EAAPAPLKVLIKDRAKVSGIKKNSAAVTKFVDDLAKIEFPGAKQLSEGIAKVGPALLSGP
Sbjct: 61  EAAPAPLKVLIKDRAKVSGIKKNSAAVTKFVDDLAKIEFPGAKQLSEGIAKVGPALLSGP 120

Query: 121 VFATFEKVSTLLPAD 135
           VFATFEKVSTLLPAD
Sbjct: 121 VFATFEKVSTLLPAD 135



>Os01g0233000 DREPP plasma membrane polypeptide family protein
          Length = 204

 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 4/126 (3%)

Query: 4   WKTKVLPKIKVVFXXXXXXXXXXXXELIKSFDESKEGINGEFEEKKADLQPKVVEIYEAA 63
           WKTKVL  +  +F            E +KSF+  KE I  E ++KK +L+PKVVE+ E++
Sbjct: 5   WKTKVLTGLNKLFDKDGKKAAAA--EFLKSFN--KEEIGKEIDDKKTELEPKVVEVVESS 60

Query: 64  PAPLKVLIKDRAKVSGIKKNSAAVTKFVDDLAKIEFPGAKQLSEGIAKVGPALLSGPVFA 123
           P  +K L+KD+   S IKKN  AVTKF+++LAKI+FPGAK +S+ +AK G   LS  +  
Sbjct: 61  PPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAF 120

Query: 124 TFEKVS 129
             EKV+
Sbjct: 121 ILEKVA 126



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.134    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,659,709
Number of extensions: 120532
Number of successful extensions: 244
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 2
Length of query: 232
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 134
Effective length of database: 11,918,829
Effective search space: 1597123086
Effective search space used: 1597123086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)