FiT-DB / Search/ Help/ Sample detail

Os01g0233000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DREPP plasma membrane polypeptide family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.0316) R2 : 0.613
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.91 (0.0829) R2dC : 0.455 R2C : 0.474
β3 : -1.26 (0.106) R2dE : 0.121 R2E : 0.15
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.262 (0.0666) R2dN8 : 0.017 R2N8 : 0.00858
σ : 0.594
deviance : 162.56
__
_____
C
peak time of C : 18.5
E
wheather : radiation
threshold : 2.41
memory length : 8
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
154.3 0.584 13 0.527 1.92 -1.27 0.634 -0.41 0.318 18.4 2.416 9 -- --
154.68 0.579 13 0.517 1.92 -1.25 0.685 -- 0.318 18.5 2.49 8 -- --
155.28 0.58 13 0.523 1.92 -1.28 -- -0.504 0.321 18.4 2.4 8 -- --
155.88 0.581 13 0.503 1.92 -1.26 -- -- 0.318 18.4 2.407 8 -- --
343.96 0.864 12.9 0.469 -- -1.42 -- -0.47 0.279 -- -4.369 7 -- --
177.22 0.624 13 0.513 2.07 -- 0.739 -- 0.32 19.7 -- -- -- --
178.77 0.626 13 0.495 2.07 -- -- -- 0.321 19.7 -- -- -- --
344.48 0.864 12.9 0.453 -- -1.41 -- -- 0.277 -- -0.3926 7 -- --
162.56 0.594 13 -- 1.91 -1.26 -- -- 0.262 18.5 2.41 8 -- --
409.33 0.945 12.9 0.468 -- -- -- -- 0.291 -- -- -- -- --
185.23 0.637 13 -- 2.06 -- -- -- 0.266 19.7 -- -- -- --
349.89 0.871 12.9 -- -- -1.42 -- -- 0.227 -- -16.11 7 -- --
415.1 0.951 12.9 -- -- -- -- -- 0.239 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 142.49 atmosphere 1000 90 > th dose independent rect. 3 16
2 142.94 wind 1 43200 < th dose dependent rect. 4 1
3 143.64 atmosphere 1000 270 > th dose independent rect. 11 7
4 144.08 wind 1 43200 < th dose independent rect. 4 1
5 144.08 wind 7 14400 > th dose dependent rect. 13 2
10 145.40 wind 9 14400 > th dose dependent rect. 18 21
15 145.64 wind 1 43200 < th dose independent rect. 9 3
17 145.86 atmosphere 1000 90 > th dose independent rect. 13 6
19 146.06 wind 1 43200 < th dose dependent rect. 9 2
22 146.22 wind 9 14400 > th dose dependent rect. 13 19
27 146.41 wind 9 14400 > th dose dependent rect. 13 8
31 146.51 wind 1 43200 > th dose independent rect. 4 1
35 146.64 wind 9 14400 < th dose independent rect. 13 2
39 146.78 wind 1 43200 < th dose dependent rect. 2 1
41 146.80 wind 1 43200 > th dose independent rect. 9 3
51 147.12 wind 9 14400 > th dose dependent rect. 13 12
56 147.22 wind 1 43200 > th dose independent rect. 10 1
62 147.36 wind 1 43200 < th dose independent rect. 10 1
63 147.38 humidity 80 14400 > th dose independent rect. 21 4
67 147.53 atmosphere 1000 270 > th dose independent rect. 23 19
71 147.69 wind 1 43200 > th dose independent rect. 2 1
72 147.75 humidity 80 14400 < th dose independent rect. 21 3
73 147.82 humidity 80 14400 > th dose independent rect. 22 2
74 147.89 wind 1 43200 < th dose independent rect. 2 1
87 148.17 humidity 80 14400 < th dose dependent rect. 21 1
95 148.39 wind 1 43200 < th dose independent rect. 2 3
106 148.67 wind 1 43200 < th dose dependent rect. 24 1
107 148.71 wind 7 14400 > th dose independent rect. 14 2
110 148.74 temperature 30 43200 > th dose dependent rect. 8 1
126 148.91 humidity 80 14400 < th dose dependent rect. 20 6
135 149.03 wind 5 43200 < th dose independent rect. 14 1
138 149.03 wind 9 14400 > th dose independent rect. 18 21
140 149.06 radiation 1 90 > th dose dependent rect. 5 9
158 149.25 wind 1 43200 > th dose independent rect. 2 3
168 149.42 radiation 1 90 > th dose dependent rect. 8 6
169 149.43 radiation 30 43200 > th dose independent rect. 9 1
173 149.51 radiation 10 30 > th dose independent rect. 9 5
182 149.65 wind 9 14400 > th dose independent rect. 13 8
183 149.65 radiation 30 90 < th dose independent rect. 1 18
184 149.71 radiation 10 43200 > th dose independent rect. 17 14
186 149.79 wind 9 14400 > th dose independent rect. 13 19
188 149.82 radiation 40 43200 > th dose independent rect. 13 1
195 149.90 atmosphere 995 270 > th dose dependent rect. 12 5
206 150.03 wind 9 14400 > th dose independent rect. 20 19
214 150.12 temperature 30 43200 > th dose independent rect. 8 1
230 150.14 radiation 30 90 < th dose independent rect. 23 20
235 150.24 radiation 1 90 > th dose dependent sin 4 NA
240 150.27 wind 9 14400 > th dose dependent rect. 3 18
243 150.28 wind 3 43200 < th dose dependent rect. 21 1
246 150.29 humidity 80 43200 < th dose dependent rect. 10 1
253 150.33 atmosphere 1000 10 > th dose independent rect. 12 8
254 150.35 wind 9 14400 < th dose independent rect. 13 8
258 150.36 wind 9 14400 > th dose dependent rect. 23 22
263 150.40 wind 1 43200 < th dose dependent rect. 2 3
269 150.44 radiation 10 43200 > th dose independent rect. 5 2
283 150.45 wind 1 43200 > th dose dependent rect. 13 1
287 150.49 radiation 1 10 > th dose dependent rect. 9 5
292 150.53 wind 9 14400 > th dose independent rect. 13 12
293 150.53 radiation 40 10 < th dose dependent sin 2 NA
302 150.62 radiation 30 43200 < th dose independent rect. 9 1
303 150.62 radiation 30 43200 > th dose independent rect. 16 18
306 150.65 radiation 40 43200 > th dose independent rect. 9 5
319 150.67 radiation 40 43200 < th dose independent rect. 13 1
343 150.73 wind 9 14400 < th dose independent rect. 13 20
345 150.75 humidity 80 14400 < th dose independent rect. 20 8
352 150.77 wind 9 14400 > th dose dependent rect. 13 6
355 150.79 wind 9 43200 < th dose dependent rect. 13 2
377 150.80 radiation 1 270 > th dose dependent rect. 9 2
393 150.88 humidity 50 270 > th dose independent rect. 16 21
397 150.90 radiation 40 43200 > th dose independent rect. 12 22
401 150.92 wind 9 14400 < th dose independent rect. 18 21
409 150.95 temperature 30 43200 < th dose independent rect. 2 7
412 150.96 radiation 40 90 < th dose dependent sin 4 NA
438 150.99 radiation 40 90 < th dose dependent rect. 23 20
444 151.03 radiation 40 43200 > th dose independent sin 18 NA
483 151.09 wind 9 14400 > th dose dependent rect. 20 23
551 151.16 wind 9 14400 > th dose dependent no NA NA
557 151.17 wind 9 14400 > th dose dependent sin 19 NA
560 151.18 radiation 40 43200 > th dose independent no NA NA
741 151.26 radiation 40 10 < th dose independent rect. 3 16
746 151.28 temperature 30 43200 < th dose independent rect. 8 1
778 151.43 radiation 40 43200 < th dose dependent rect. 13 1
785 151.46 radiation 40 10 < th dose dependent rect. 12 22
786 151.47 radiation 30 43200 > th dose independent sin 11 NA
787 151.47 radiation 20 43200 < th dose independent rect. 13 1
796 151.48 radiation 1 10 > th dose dependent rect. 6 8
799 151.49 temperature 30 43200 < th dose independent rect. 19 14
812 151.54 radiation 20 43200 > th dose independent rect. 13 20
852 151.63 radiation 1 43200 > th dose dependent rect. 13 1
890 151.71 radiation 1 10 > th dose dependent rect. 15 23
908 151.74 wind 9 14400 < th dose independent rect. 13 11
909 151.75 humidity 70 43200 > th dose independent rect. 19 1
939 151.84 radiation 20 43200 > th dose independent rect. 7 9