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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0285300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DREPP plasma membrane polypeptide family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.96 (0.059) R2 : 0.598
β1 : -4.61 (0.214) R2dD : 0.436 R2D : 0.371
β2 : 1.23 (0.159) R2dC : 0.0594 R2C : 0.06
β3 : 0.666 (0.119) R2dE : 0.0372 R2E : 0.1
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.981 (0.137) R2dN8 : 0.0751 R2N8 : 0.0309
σ : 1.08
deviance : 535.81
__
_____
C
peak time of C : 5.8
E
wheather : temperature
threshold : 24.68
memory length : 6
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
516.98 1.07 4.94 -4.4 1.23 0.726 -2.43 -0.655 -0.904 5.83 24.6 9 -- --
518.98 1.06 4.96 -4.54 1.24 0.691 -2.68 -- -0.947 5.73 24.6 7 -- --
530.54 1.07 4.93 -4.35 1.23 0.716 -- -0.963 -0.891 5.84 24.7 6 -- --
535.81 1.08 4.96 -4.61 1.23 0.666 -- -- -0.981 5.8 24.68 6 -- --
600.83 1.15 4.92 -4.25 -- 0.994 -- -0.892 -0.715 -- 24.74 4 -- --
552.83 1.1 5.04 -4.81 1.56 -- -2.31 -- -1.33 5.08 -- -- -- --
566.33 1.11 5.04 -4.81 1.55 -- -- -- -1.32 5.01 -- -- -- --
605.05 1.15 4.95 -4.5 -- 0.962 -- -- -0.801 -- 24.74 4 -- --
1082.59 1.53 4.86 -- 1.31 1.03 -- -- -0.547 5.56 22.6 8 -- --
692.18 1.23 5.05 -4.75 -- -- -- -- -1.28 -- -- -- -- --
1175.13 1.6 4.92 -- 1.46 -- -- -- -0.784 5.12 -- -- -- --
1124.03 1.56 4.81 -- -- 1.32 -- -- -0.149 -- 24.7 12 -- --
1287.35 1.67 4.94 -- -- -- -- -- -0.753 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 502.66 wind 1 14400 < th dose dependent rect. 22 6
2 504.58 wind 1 14400 < th dose dependent rect. 1 2
11 509.91 temperature 20 90 > th dose dependent rect. 19 22
12 510.88 atmosphere 995 43200 > th dose independent sin 9 NA
13 510.90 atmosphere 995 43200 < th dose independent sin 9 NA
14 511.21 radiation 10 1440 < th dose independent rect. 15 3
16 511.35 atmosphere 995 43200 > th dose independent rect. 18 16
17 511.36 atmosphere 995 43200 < th dose independent rect. 18 16
20 511.91 atmosphere 995 43200 < th dose dependent sin 12 NA
22 511.98 atmosphere 995 43200 < th dose independent rect. 21 12
25 512.00 atmosphere 995 43200 > th dose independent rect. 19 14
28 512.07 radiation 10 1440 < th dose independent rect. 15 15
38 512.36 radiation 10 1440 < th dose independent rect. 16 1
39 512.40 temperature 25 10 < th dose independent rect. 2 11
43 512.58 radiation 10 1440 < th dose independent rect. 15 12
47 512.61 radiation 10 1440 < th dose independent rect. 15 10
51 512.66 radiation 10 1440 < th dose independent rect. 15 8
57 512.79 wind 1 14400 < th dose independent rect. 24 3
58 512.81 wind 1 14400 < th dose independent rect. 22 5
72 513.59 atmosphere 995 43200 > th dose independent rect. 3 5
80 513.90 atmosphere 995 43200 < th dose independent rect. 3 5
94 514.11 atmosphere 995 43200 < th dose dependent rect. 2 6
96 514.18 radiation 1 1440 > th dose dependent rect. 16 14
100 514.21 temperature 25 10 < th dose independent rect. 4 9
101 514.27 atmosphere 995 43200 < th dose dependent rect. 16 17
109 514.40 atmosphere 995 43200 > th dose independent rect. 19 3
112 514.42 atmosphere 995 43200 < th dose dependent rect. 17 15
119 514.55 atmosphere 995 43200 < th dose dependent rect. 18 6
120 514.56 atmosphere 995 43200 > th dose independent rect. 23 1
121 514.56 atmosphere 995 43200 > th dose independent rect. 19 5
127 514.61 atmosphere 995 43200 < th dose independent rect. 21 1
140 514.61 atmosphere 995 43200 < th dose dependent rect. 21 1
160 514.74 atmosphere 995 43200 < th dose dependent rect. 21 11
168 514.82 temperature 25 10 < th dose independent sin 3 NA
171 514.87 radiation 1 1440 > th dose dependent rect. 15 16
173 514.93 radiation 10 1440 > th dose dependent rect. 16 1
176 515.06 wind 9 43200 > th dose dependent rect. 15 2
185 515.13 temperature 25 10 < th dose independent rect. 17 20
224 515.67 humidity 80 1440 < th dose dependent rect. 16 15
232 515.76 humidity 80 1440 < th dose dependent rect. 16 7
234 515.78 temperature 25 10 > th dose independent rect. 1 17
236 515.80 humidity 80 1440 < th dose dependent rect. 16 11
241 515.83 wind 9 43200 > th dose independent rect. 10 4
250 515.86 temperature 20 10 > th dose dependent rect. 6 23
262 516.05 wind 9 43200 > th dose independent rect. 15 2
264 516.07 temperature 25 10 < th dose independent rect. 2 17
275 516.20 temperature 20 10 > th dose dependent rect. 9 23
307 516.32 humidity 80 1440 < th dose dependent sin 13 NA
309 516.33 temperature 20 270 > th dose dependent sin 5 NA
311 516.34 radiation 20 4320 > th dose independent rect. 15 17
332 516.45 temperature 20 270 > th dose dependent rect. 3 11
333 516.46 radiation 40 1440 < th dose dependent rect. 15 16
335 516.51 radiation 40 1440 < th dose dependent rect. 16 14
342 516.57 temperature 20 4320 < th dose independent rect. 19 5
343 516.58 radiation 10 1440 < th dose independent sin 15 NA
344 516.58 temperature 20 4320 > th dose independent rect. 20 3
358 516.74 radiation 40 1440 < th dose dependent rect. 16 1
359 516.77 temperature 20 4320 < th dose independent rect. 22 1
368 516.83 temperature 20 4320 > th dose independent rect. 19 5
373 516.86 temperature 20 10 > th dose dependent rect. 3 23
401 517.06 wind 9 43200 < th dose independent rect. 15 2
425 517.14 atmosphere 995 43200 < th dose dependent rect. 13 19
426 517.15 temperature 25 10 < th dose independent rect. 4 15
443 517.28 radiation 40 43200 > th dose independent rect. 13 1
445 517.29 wind 9 43200 < th dose independent rect. 10 4
446 517.29 humidity 60 1440 > th dose independent rect. 14 21
454 517.38 radiation 30 1440 > th dose independent rect. 15 2
483 517.57 humidity 50 1440 < th dose dependent rect. 16 1
492 517.61 atmosphere 995 43200 < th dose dependent rect. 13 17
529 517.69 radiation 10 1440 < th dose independent rect. 11 19
534 517.73 humidity 50 1440 < th dose independent rect. 16 1
589 517.97 radiation 40 43200 > th dose independent rect. 13 19
630 518.07 temperature 20 10 > th dose dependent rect. 23 23
633 518.09 temperature 25 270 < th dose independent rect. 1 11
643 518.17 temperature 20 4320 > th dose independent rect. 19 8
663 518.32 temperature 25 270 < th dose independent rect. 23 13
680 518.39 atmosphere 995 43200 > th dose independent rect. 5 1
684 518.41 temperature 20 4320 < th dose independent rect. 19 8
699 518.52 humidity 70 1440 < th dose dependent rect. 16 1
700 518.52 temperature 20 10 > th dose dependent rect. 23 19
707 518.60 temperature 20 1440 > th dose independent rect. 24 4
708 518.61 radiation 10 1440 < th dose independent rect. 11 7
710 518.63 temperature 20 1440 > th dose independent rect. 3 1
712 518.64 temperature 25 10 > th dose independent rect. 20 22
716 518.68 temperature 20 1440 > th dose independent rect. 1 1
718 518.68 temperature 20 10 > th dose dependent rect. 1 23
719 518.70 radiation 10 43200 < th dose dependent rect. 6 4
739 518.78 temperature 20 1440 < th dose independent rect. 3 1
740 518.78 temperature 20 10 > th dose dependent no NA NA
746 518.80 temperature 20 10 > th dose dependent rect. 6 20
755 518.85 humidity 70 1440 < th dose dependent rect. 16 3
756 518.86 temperature 20 1440 < th dose independent rect. 24 4
765 518.89 humidity 60 1440 > th dose independent rect. 15 3
772 518.91 atmosphere 1005 10 > th dose dependent rect. 24 20
773 518.92 humidity 90 1440 < th dose dependent rect. 13 20
779 518.94 radiation 10 1440 < th dose independent rect. 11 16
789 518.96 radiation 10 1440 < th dose independent rect. 11 14
794 518.97 radiation 10 1440 < th dose independent rect. 11 12
798 518.98 temperature 25 10 < th dose independent rect. 24 13
802 518.99 wind 9 43200 > th dose independent rect. 11 1
815 519.03 radiation 10 43200 < th dose dependent rect. 7 1
818 519.04 temperature 20 1440 < th dose independent rect. 1 1
821 519.05 humidity 80 1440 < th dose dependent rect. 11 12
824 519.07 temperature 30 270 < th dose dependent rect. 23 13
842 519.10 temperature 20 90 > th dose dependent rect. 5 21
856 519.13 radiation 40 1440 < th dose dependent rect. 15 12
894 519.17 radiation 40 1440 < th dose dependent rect. 15 10
900 519.19 humidity 70 1440 < th dose independent sin 13 NA
920 519.24 humidity 70 1440 < th dose independent rect. 15 17
926 519.25 radiation 40 1440 < th dose dependent rect. 15 4
980 519.37 temperature 30 270 < th dose dependent rect. 22 21
985 519.39 atmosphere 995 43200 < th dose independent rect. 1 1