BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0285300 Os02g0285300|AK058613
         (232 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20260.4  | chr4:10941593-10943227 FORWARD LENGTH=227          118   2e-27

>AT4G20260.4 | chr4:10941593-10943227 FORWARD LENGTH=227
          Length = 226

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/135 (49%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 1   MDYWKTKVLPKIKVVFXXXXXXXXXXXXELIKSFDESKEGINGEFEEKKADLQPKVVEIY 60
           M YW +KV+PK K +F               K+FDESKE IN E EEKK +LQPKVVE Y
Sbjct: 1   MGYWNSKVVPKFKKLFEKNSAKKAAAAE-ATKTFDESKETINKEIEEKKTELQPKVVETY 59

Query: 61  EAAPAPLKVLIKDRAKVSGIKKNSAAVTKFVDDLAKIEFPGAKQLSEGIAKVGPALLSGP 120
           EA  A +K  +    KV+G+KKNSAAV K++++L KIEFPG+K +SE  +  G   ++GP
Sbjct: 60  EATSAEVKQALVRDPKVAGLKKNSAAVQKYLEELVKIEFPGSKAVSEASSSFGAGYVAGP 119

Query: 121 VFATFEKVSTLLPAD 135
           V   FEKVS  LP +
Sbjct: 120 VTFIFEKVSVFLPEE 134



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.134    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,423,952
Number of extensions: 83111
Number of successful extensions: 230
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 137
Effective length of database: 8,502,049
Effective search space: 1164780713
Effective search space used: 1164780713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)