BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0280100 Os02g0280100|Os02g0280100
(435 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0280100 Micro-fibrillar-associated 1, C-terminal famil... 468 e-132
Os02g0295900 188 6e-48
Os02g0294000 Micro-fibrillar-associated 1, C-terminal famil... 133 2e-31
Os06g0335101 Micro-fibrillar-associated 1, C-terminal famil... 84 1e-16
>Os02g0280100 Micro-fibrillar-associated 1, C-terminal family protein
Length = 435
Score = 468 bits (1203), Expect = e-132, Method: Compositional matrix adjust.
Identities = 242/263 (92%), Positives = 242/263 (92%)
Query: 173 QTGMAMVKPVFIPKSQRDTIAXXXXXXXXXXXXXXXXXXXXXARKIETRQIVVEEIRKEE 232
QTGMAMVKPVFIPKSQRDTIA ARKIETRQIVVEEIRKEE
Sbjct: 173 QTGMAMVKPVFIPKSQRDTIAERERLEEEERQLEELVKKRLEARKIETRQIVVEEIRKEE 232
Query: 233 HIEKTLNEEANIEDVDTDDELNEAEEYESWKNREIARIKRDREERDARLKEKEEIEKVRN 292
HIEKTLNEEANIEDVDTDDELNEAEEYESWKNREIARIKRDREERDARLKEKEEIEKVRN
Sbjct: 233 HIEKTLNEEANIEDVDTDDELNEAEEYESWKNREIARIKRDREERDARLKEKEEIEKVRN 292
Query: 293 MTEEERREWERKNPKPLRENKQKWKFMQKYYHKGAFFQEGADDVIQSAGKDDIYARDFSA 352
MTEEERREWERKNPKPLRENKQKWKFMQKYYHKGAFFQEGADDVIQSAGKDDIYARDFSA
Sbjct: 293 MTEEERREWERKNPKPLRENKQKWKFMQKYYHKGAFFQEGADDVIQSAGKDDIYARDFSA 352
Query: 353 PTGEDKMDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNAPWATNGPLRAKYNAKMAG 412
PTGEDKMDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNAPWATNGPLRAKYNAKMAG
Sbjct: 353 PTGEDKMDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNAPWATNGPLRAKYNAKMAG 412
Query: 413 MNAPIAKPKGSKKMKDWDTKQDD 435
MNAPIAKPKGSKKMKDWDTKQDD
Sbjct: 413 MNAPIAKPKGSKKMKDWDTKQDD 435
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 99/107 (92%), Positives = 99/107 (92%)
Query: 1 MSVAAGVSDAAITVRDKLRGKIGQTKVKRYWPGKAPEWADDGEDDADLRTANKVSLDKAF 60
MSVAAGVSDAAITVRDKLRGKIGQTKVKRYWPGKAPEWADDGEDDADLRTANKVSLDKAF
Sbjct: 1 MSVAAGVSDAAITVRDKLRGKIGQTKVKRYWPGKAPEWADDGEDDADLRTANKVSLDKAF 60
Query: 61 PKDEDGDAPPLKXXXXXXXXAQTRAENKEELRADHRRIRQAEIVSTV 107
PKDEDGDAPPLK AQTRAENKEELRADHRRIRQAEIVSTV
Sbjct: 61 PKDEDGDAPPLKDDRRLRRLAQTRAENKEELRADHRRIRQAEIVSTV 107
>Os02g0295900
Length = 540
Score = 188 bits (478), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 108/214 (50%), Positives = 138/214 (64%), Gaps = 13/214 (6%)
Query: 178 MVKPVFIPKSQRDTIAXXXXXXXXXXXXXXXXXXXXXARKIETRQIVVEEIRKEEHIE-K 236
M P+FIPK +RDTI RK +TRQI+++EI EE +
Sbjct: 157 MAVPLFIPKPRRDTIRLKEEERQRLEDELHRKRLED--RKAQTRQILLQEIINEELLAAN 214
Query: 237 TLNEEANIEDVDTDDELNEAEEYESWKNREIARIKRDREERDARLKEKEEIEKVRNMTEE 296
T ++EA I VDTDDE+++AEEYESW+ RE+ARIKR REE I+ +++ E+
Sbjct: 215 TASDEAAINGVDTDDEVDQAEEYESWRRREMARIKRIREESG--------IDDDKSIMED 266
Query: 297 ERREWERKNPKPLRENKQKWKFMQKYYHKGAFFQEGADDVIQSAGKDDIYARDFSAPTGE 356
E +R PK + K++ +FMQ+YYHKG FFQ+ ADD Q+AG +IY RDFS PTG
Sbjct: 267 ENPVADR--PKKKMKIKKQMRFMQRYYHKGCFFQQDADDAAQTAGSCEIYRRDFSGPTGL 324
Query: 357 DKMDKSILPKVMQVKHFGRSGRTKWTHLVNEDTT 390
DKMD S+LPKV+QVKHFGR G KWTHLVNEDTT
Sbjct: 325 DKMDVSVLPKVLQVKHFGRRGGRKWTHLVNEDTT 358
>Os02g0294000 Micro-fibrillar-associated 1, C-terminal family protein
Length = 360
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 115/200 (57%), Gaps = 24/200 (12%)
Query: 178 MVKPVFIPKSQRDTIAXXXXXXXXXXXXXXXXXXXXXA--RKIETRQIVVEEIRKEEHIE 235
M P+F+PKSQRDTI RK +TR+I+++EI KEE +
Sbjct: 157 MAAPLFVPKSQRDTIRLREEEQHRQRRRLELELDKKRLEDRKAQTRRILLQEIIKEELLA 216
Query: 236 KTLNEEAN---IEDVDTDDELNEAEEYESWKNREIARIKRDREERDARLKEKEEIEKVRN 292
T I+ VDTDDE+++AEE+ESW+ RE AR+KR REE + + E N
Sbjct: 217 ATTASAEAEAAIDGVDTDDEVDQAEEHESWRRREAARVKRSREE--SGIDE--------N 266
Query: 293 MTEEERREWERKNPKPLRENKQKWKFMQKYYHKGAFFQEGADDVIQS-AGKDDIYARDFS 351
++R PK + KQ +FM++YYHKG FFQ+ AD Q+ AG +IY RDFS
Sbjct: 267 PVADDR-------PKKMTIKKQ-MRFMRRYYHKGCFFQDDADGAAQTAAGACEIYRRDFS 318
Query: 352 APTGEDKMDKSILPKVMQVK 371
PTG DKMD S+LPKVMQV+
Sbjct: 319 GPTGLDKMDVSVLPKVMQVE 338
>Os06g0335101 Micro-fibrillar-associated 1, C-terminal family protein
Length = 57
Score = 84.3 bits (207), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/48 (79%), Positives = 40/48 (83%)
Query: 349 DFSAPTGEDKMDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNAPW 396
DFS PTGED MDK+ILPKVMQVK FG GR KWT LVNEDTTDWN P+
Sbjct: 5 DFSTPTGEDMMDKTILPKVMQVKRFGFKGRMKWTDLVNEDTTDWNNPY 52
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.128 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,161,648
Number of extensions: 515221
Number of successful extensions: 2863
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2855
Number of HSP's successfully gapped: 5
Length of query: 435
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 331
Effective length of database: 11,605,545
Effective search space: 3841435395
Effective search space used: 3841435395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)