BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0277600 Os02g0277600|AK110791
         (499 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0277600  Similar to MFDR (NADP adrenodoxin-like ferredo...   953   0.0  
Os01g0681900  NADH dependent Glutamate Synthase precursor (E...    69   1e-11
Os05g0555600  Similar to NADH dependent Glutamate Synthase p...    66   5e-11

>Os02g0277600 Similar to MFDR (NADP adrenodoxin-like ferredoxin reductase)
          Length = 499

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/465 (100%), Positives = 465/465 (100%)

Query: 35  EPLHVCVVGSGPAGFYTADKMLKGHEGAQVDIIDRLPTPFGLVRSGVAPDHPETKIVVNQ 94
           EPLHVCVVGSGPAGFYTADKMLKGHEGAQVDIIDRLPTPFGLVRSGVAPDHPETKIVVNQ
Sbjct: 35  EPLHVCVVGSGPAGFYTADKMLKGHEGAQVDIIDRLPTPFGLVRSGVAPDHPETKIVVNQ 94

Query: 95  FSRVAANDRCQFYGNVTLGRDVSLSELRKTYDVVVLAYGAESDRSLGIPGEDLRGIHSAR 154
           FSRVAANDRCQFYGNVTLGRDVSLSELRKTYDVVVLAYGAESDRSLGIPGEDLRGIHSAR
Sbjct: 95  FSRVAANDRCQFYGNVTLGRDVSLSELRKTYDVVVLAYGAESDRSLGIPGEDLRGIHSAR 154

Query: 155 EFVWWYNGHPDMCNLAPDLQSTDSAVVLGQGNVALDVARILLRCTSELAATDIADYALDA 214
           EFVWWYNGHPDMCNLAPDLQSTDSAVVLGQGNVALDVARILLRCTSELAATDIADYALDA
Sbjct: 155 EFVWWYNGHPDMCNLAPDLQSTDSAVVLGQGNVALDVARILLRCTSELAATDIADYALDA 214

Query: 215 LRGSTIKKVYLVGRRGPVQAACTAKELREILGLKNVHVFIKEADLVTLPADEEEIRNSRI 274
           LRGSTIKKVYLVGRRGPVQAACTAKELREILGLKNVHVFIKEADLVTLPADEEEIRNSRI
Sbjct: 215 LRGSTIKKVYLVGRRGPVQAACTAKELREILGLKNVHVFIKEADLVTLPADEEEIRNSRI 274

Query: 275 KRRVYELLSKAAIAHKGKNNNGQKELHFVFFRRPTRFLPSEDGVTVGAVQLEKTCLKDDG 334
           KRRVYELLSKAAIAHKGKNNNGQKELHFVFFRRPTRFLPSEDGVTVGAVQLEKTCLKDDG
Sbjct: 275 KRRVYELLSKAAIAHKGKNNNGQKELHFVFFRRPTRFLPSEDGVTVGAVQLEKTCLKDDG 334

Query: 335 VAGKQVAVGTGEFEDLKCGLVLKSIGYKSLPVEGLPFDKYRGIVPNLKGRVLSSESENAT 394
           VAGKQVAVGTGEFEDLKCGLVLKSIGYKSLPVEGLPFDKYRGIVPNLKGRVLSSESENAT
Sbjct: 335 VAGKQVAVGTGEFEDLKCGLVLKSIGYKSLPVEGLPFDKYRGIVPNLKGRVLSSESENAT 394

Query: 395 VEPGLYVVGWLKRGPTGIVATNLHCAEETVASILEDDKKGLFMGPSDSKKQGRRGLLEIL 454
           VEPGLYVVGWLKRGPTGIVATNLHCAEETVASILEDDKKGLFMGPSDSKKQGRRGLLEIL
Sbjct: 395 VEPGLYVVGWLKRGPTGIVATNLHCAEETVASILEDDKKGLFMGPSDSKKQGRRGLLEIL 454

Query: 455 EQKNIRFVPFDGWEKIDSKEKMAGELKNKPREKITTWNEILMASN 499
           EQKNIRFVPFDGWEKIDSKEKMAGELKNKPREKITTWNEILMASN
Sbjct: 455 EQKNIRFVPFDGWEKIDSKEKMAGELKNKPREKITTWNEILMASN 499



>Os01g0681900 NADH dependent Glutamate Synthase precursor (EC 1.4.1.14)
          Length = 2167

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 65/122 (53%), Gaps = 6/122 (4%)

Query: 39   VCVVGSGPAGFYTADKMLKGHEGAQVDIIDRLPTPFGLVRSGVAPDHPETKI-VVNQFSR 97
            V ++GSGPAG   AD++ K   G  V + +R     GL+  GV P+    KI +V +   
Sbjct: 1809 VAIIGSGPAGLAAADQLNK--MGHFVTVFERADRIGGLMMYGV-PNMKTDKIEIVQRRVN 1865

Query: 98   VAANDRCQFYGNVTLGRD--VSLSELRKTYDVVVLAYGAESDRSLGIPGEDLRGIHSARE 155
            + A +   F  N  +G D   S+  LR   D V+LA GA   R LGIPG +L G+H A E
Sbjct: 1866 LMAEEGITFVVNANVGSDPLYSIERLRSENDAVILACGATKPRDLGIPGRELSGVHFAME 1925

Query: 156  FV 157
            F+
Sbjct: 1926 FL 1927



>Os05g0555600 Similar to NADH dependent Glutamate Synthase precursor (EC
           1.4.1.14)
          Length = 609

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 39  VCVVGSGPAGFYTADKMLKGHEGAQVDIIDRLPTPFGLVRSGVAPDHPETKIVVNQFSRV 98
           V +VGSGPAG   AD++ K   G  V + +R     GL+  GV     + + +V +   +
Sbjct: 248 VAIVGSGPAGLAAADQLNK--MGHFVTVFERADRIGGLMMYGVPNMKADKEGIVQRRVEL 305

Query: 99  AANDRCQFYGNVTLGRD--VSLSELRKTYDVVVLAYGAESDRSLGIPGEDLRGIHSAREF 156
            A +  QF  N  +G D   S+ +LR   D ++LA GA   + L IPG +L GIH A EF
Sbjct: 306 MAKEGVQFIVNAHVGSDPLYSVEKLRSENDAIILACGATKPKDLPIPGRELAGIHFAMEF 365

Query: 157 V 157
           +
Sbjct: 366 L 366



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,179,018
Number of extensions: 700477
Number of successful extensions: 1545
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1542
Number of HSP's successfully gapped: 3
Length of query: 499
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 394
Effective length of database: 11,553,331
Effective search space: 4552012414
Effective search space used: 4552012414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)