Os01g0681900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NADH dependent Glutamate Synthase precursor (EC 1.4.1.14).
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Os01g0681900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NADH dependent Glutamate Synthase precursor (EC 1.4.1.14).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.72 | 0.499 | 11.1 | 0.295 | 2.06 | 1.27 | 0.571 | -0.563 | 0.772 | 22.7 | 90.54 | 259 | -- | -- |
| 113.24 | 0.496 | 11.1 | 0.275 | 2.06 | 1.24 | 0.548 | -- | 0.768 | 22.7 | 90.43 | 261 | -- | -- |
| 114.05 | 0.497 | 11.1 | 0.268 | 2.05 | 1.26 | -- | -0.49 | 0.77 | 22.7 | 90.37 | 259 | -- | -- |
| 114.47 | 0.498 | 11.1 | 0.251 | 2.05 | 1.22 | -- | -- | 0.765 | 22.7 | 90.19 | 260 | -- | -- |
| 249.62 | 0.736 | 11 | 0.415 | -- | 1.63 | -- | 0.19 | 0.719 | -- | 66.39 | 2 | -- | -- |
| 139.67 | 0.554 | 11.1 | 0.404 | 2.08 | -- | 0.621 | -- | 0.577 | 23.7 | -- | -- | -- | -- |
| 141.34 | 0.557 | 11.1 | 0.379 | 2.08 | -- | -- | -- | 0.575 | 23.7 | -- | -- | -- | -- |
| 249.2 | 0.738 | 11 | 0.379 | -- | 1.66 | -- | -- | 0.716 | -- | 66.57 | 2 | -- | -- |
| 116.05 | 0.502 | 11.1 | -- | 2.05 | 1.23 | -- | -- | 0.74 | 22.7 | 89.68 | 259 | -- | -- |
| 413.23 | 0.95 | 11.1 | 0.439 | -- | -- | -- | -- | 0.6 | -- | -- | -- | -- | -- |
| 145.13 | 0.564 | 11.1 | -- | 2.08 | -- | -- | -- | 0.532 | 23.7 | -- | -- | -- | -- |
| 252.94 | 0.741 | 11.1 | -- | -- | 1.67 | -- | -- | 0.667 | -- | 66.38 | 2 | -- | -- |
| 418.31 | 0.955 | 11.1 | -- | -- | -- | -- | -- | 0.551 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.14 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 2 | 105.07 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 7 | 105.75 | radiation | 1.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 8 | 106.09 | humidity | 90.0 | 90 | < th | dose independent | sin | 3 | NA |
| 11 | 106.36 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 18 |
| 15 | 106.51 | radiation | 1.0 | 270 | > th | dose independent | sin | 3 | NA |
| 16 | 106.56 | radiation | 1.0 | 270 | < th | dose independent | sin | 3 | NA |
| 17 | 106.59 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 18 | 106.62 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 20 | 106.68 | humidity | 90.0 | 90 | < th | dose independent | rect. | 5 | 10 |
| 21 | 106.69 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 24 | 106.74 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 25 | 106.76 | humidity | 90.0 | 90 | < th | dose independent | rect. | 3 | 12 |
| 30 | 106.90 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 43 | 107.24 | humidity | 90.0 | 90 | < th | dose independent | rect. | 23 | 16 |
| 57 | 107.58 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 60 | 107.69 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 61 | 107.70 | humidity | 90.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 67 | 107.82 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 11 |
| 83 | 107.92 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 86 | 107.99 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 14 |
| 91 | 108.08 | humidity | 90.0 | 90 | > th | dose independent | sin | 3 | NA |
| 96 | 108.13 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 14 |
| 107 | 108.26 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 12 |
| 114 | 108.33 | humidity | 80.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 115 | 108.37 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 9 |
| 124 | 108.46 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 127 | 108.50 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 10 |
| 130 | 108.54 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 3 | 12 |
| 138 | 108.60 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 3 | 8 |
| 188 | 109.04 | humidity | 90.0 | 90 | < th | dose independent | rect. | 20 | 19 |
| 249 | 109.60 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 310 | 110.23 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 9 |
| 352 | 110.56 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 429 | 111.17 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 513 | 111.68 | radiation | 1.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 532 | 111.78 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 598 | 112.07 | wind | 7.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 600 | 112.08 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 15 |
| 627 | 112.17 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 632 | 112.19 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 656 | 112.31 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 669 | 112.39 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 686 | 112.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 19 |
| 687 | 112.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 689 | 112.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 700 | 112.55 | wind | 3.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 715 | 112.62 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 731 | 112.70 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 805 | 112.94 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 814 | 112.96 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 829 | 113.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 6 |
| 830 | 113.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 6 |
| 904 | 113.17 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 931 | 113.24 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 965 | 113.35 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 9 |
| 967 | 113.35 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 9 |