BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0276400 Os02g0276400|AK100588
(236 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0276400 Isochorismatase hydrolase family protein 395 e-110
Os02g0276200 Isochorismatase hydrolase family protein 162 3e-40
>Os02g0276400 Isochorismatase hydrolase family protein
Length = 236
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/220 (89%), Positives = 197/220 (89%)
Query: 17 KKRWLSPRISTSPSKSRRSMXXXXXXXXXXKWSETAMLVIDMQKDFVDPAMRSPMLVDGG 76
KKRWLSPRISTSPSKSRRSM KWSETAMLVIDMQKDFVDPAMRSPMLVDGG
Sbjct: 17 KKRWLSPRISTSPSKSRRSMAAAAAGGGGAKWSETAMLVIDMQKDFVDPAMRSPMLVDGG 76
Query: 77 QXXXXXXXXXXXXXRERGIYVVWVVREHDPSGADVEIFRRRYYSGGKGPTVKGLKGADLA 136
Q RERGIYVVWVVREHDPSGADVEIFRRRYYSGGKGPTVKGLKGADLA
Sbjct: 77 QAVVPTVAEAVAVARERGIYVVWVVREHDPSGADVEIFRRRYYSGGKGPTVKGLKGADLA 136
Query: 137 DGLVIKEGEYKLVKTRFSAFFATPLDSVLKTSGIKKLVIVGVQTPNCIRQTVFDAVALDY 196
DGLVIKEGEYKLVKTRFSAFFATPLDSVLKTSGIKKLVIVGVQTPNCIRQTVFDAVALDY
Sbjct: 137 DGLVIKEGEYKLVKTRFSAFFATPLDSVLKTSGIKKLVIVGVQTPNCIRQTVFDAVALDY 196
Query: 197 EKVTVIIDATAAARPEIHLSNIRDMKNIGVETPTLEEWRR 236
EKVTVIIDATAAARPEIHLSNIRDMKNIGVETPTLEEWRR
Sbjct: 197 EKVTVIIDATAAARPEIHLSNIRDMKNIGVETPTLEEWRR 236
>Os02g0276200 Isochorismatase hydrolase family protein
Length = 125
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 92/120 (76%), Gaps = 1/120 (0%)
Query: 58 MQKDFVDPAMRSPMLVDGGQXXXXXXXXXXXXXRERGIYVVWVVREHDPSGADVEIFRRR 117
MQKDFVDPA S L+ G+ R+RGI++VWVVREHDPSG DVE+FRR
Sbjct: 1 MQKDFVDPATSSAALL-AGEAILPTVTAAVAVARQRGIFIVWVVREHDPSGRDVELFRRH 59
Query: 118 YYSGGKGPTVKGLKGADLADGLVIKEGEYKLVKTRFSAFFATPLDSVLKTSGIKKLVIVG 177
+YS GKG V+G KGA+LADGL IK+G+YKLVKTRFSAFFAT LDSVLKTSGIK LVIVG
Sbjct: 60 FYSSGKGLGVEGSKGAELADGLTIKDGDYKLVKTRFSAFFATHLDSVLKTSGIKNLVIVG 119
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,987,570
Number of extensions: 249113
Number of successful extensions: 370
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 2
Length of query: 236
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 138
Effective length of database: 11,918,829
Effective search space: 1644798402
Effective search space used: 1644798402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)