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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0276400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Isochorismatase hydrolase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0265) R2 : 0.561
β1 : -1.19 (0.0966) R2dD : 0.158 R2D : 0.21
β2 : 0.622 (0.0676) R2dC : 0.0855 R2C : 0.0611
β3 : -50.4 (3.13) R2dE : 10.4 R2E : -10.1
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 176 (10.9) R2dD*E : 10.4 R2D*E : -10.1
γ1 : -0.255 (0.0553) R2dN8 : 0.0279 R2N8 : -0.0386
σ : 0.484
deviance : 107.83
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_____
C
peak time of C : 6.55
E
wheather : precipitation
threshold : 0.07585
memory length : 10
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.99
open length of G : 1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
105.63 0.479 10.3 -1.2 0.628 -50.7 0.941 176 -0.254 6.68 0.1 10 3 1
165.91 0.605 10.4 -1.51 0.572 -0.0279 1.31 -- -0.218 6.77 0.1 10 3 1
107.83 0.484 10.3 -1.19 0.622 -50.4 -- 176 -0.255 6.55 0.07585 10 2.99 1
169.03 0.606 10.4 -1.48 0.611 -0.849 -- -- -0.222 6.54 0.04323 18 3 0.942
128.68 0.528 10.3 -1.18 -- -50.2 -- 176 -0.214 -- 0.09282 8 3.07 1.72
165.92 0.604 10.4 -1.51 0.572 -- 1.31 -- -0.218 6.77 -- -- -- --
170.29 0.611 10.4 -1.49 0.576 -- -- -- -0.221 6.83 -- -- -- --
186.7 0.636 10.4 -1.47 -- -0.951 -- -- -0.214 -- 0.05672 17 2.98 0.933
227.62 0.703 10.4 -- 0.572 -0.834 -- -- -0.0812 6.69 -0.1091 5 2.98 1.88
187.64 0.64 10.4 -1.48 -- -- -- -- -0.21 -- -- -- -- --
228.9 0.708 10.4 -- 0.559 -- -- -- -0.0553 6.99 -- -- -- --
244.69 0.729 10.4 -- -- -0.791 -- -- -0.0487 -- 5.998e-07 5 2.94 1.92
245.32 0.731 10.4 -- -- -- -- -- -0.0463 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 105.63 precipitation 0.1 10 > th dose independent rect. 3 1
5 105.63 precipitation 0.1 10 > th dose dependent rect. 3 1
9 105.74 wind 1.0 10 < th dose independent rect. 4 1
11 105.74 wind 1.0 10 < th dose dependent rect. 4 1
27 127.61 atmosphere 1005.0 90 < th dose dependent rect. 2 1
76 128.53 wind 1.0 10 < th dose independent rect. 3 5
89 131.01 atmosphere 1005.0 10 < th dose dependent rect. 4 1
96 131.60 precipitation 0.1 270 > th dose independent rect. 2 1
97 131.60 precipitation 0.1 270 > th dose dependent rect. 2 1
98 131.66 atmosphere 1005.0 10 < th dose dependent rect. 2 3
125 135.39 atmosphere 1000.0 90 < th dose dependent rect. 20 3
174 139.14 atmosphere 1000.0 90 < th dose independent rect. 20 3
187 141.09 wind 1.0 270 < th dose dependent rect. 24 1
208 142.13 atmosphere 1005.0 90 < th dose independent rect. 2 1
237 142.56 atmosphere 1000.0 270 < th dose dependent rect. 18 3
240 142.74 precipitation 0.1 10 > th dose independent sin 4 NA
242 142.74 precipitation 0.1 10 > th dose dependent sin 4 NA
248 142.95 precipitation 0.1 10 < th dose independent sin 5 NA
249 142.95 precipitation 0.1 10 < th dose dependent sin 5 NA
291 144.41 humidity 90.0 30 > th dose dependent rect. 2 2
296 144.63 atmosphere 1000.0 10 < th dose dependent rect. 21 3
343 145.79 temperature 20.0 10 > th dose independent rect. 3 1
350 146.03 radiation 1.0 1440 < th dose independent rect. 11 1
351 146.03 radiation 1.0 1440 < th dose dependent rect. 11 1
416 146.53 atmosphere 1000.0 10 < th dose independent rect. 21 1
423 146.53 atmosphere 1000.0 10 < th dose dependent rect. 21 1
433 146.57 atmosphere 1005.0 270 < th dose independent rect. 24 1
557 147.40 wind 1.0 10 < th dose independent sin 4 NA
585 147.63 atmosphere 1005.0 270 < th dose independent rect. 24 3
653 148.58 wind 1.0 270 < th dose independent rect. 23 2
916 150.08 wind 1.0 10 > th dose independent sin 5 NA
968 150.37 wind 1.0 10 < th dose dependent sin 3 NA
989 150.53 atmosphere 1000.0 10 < th dose independent rect. 23 9