BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0276200 Os02g0276200|J075059P05
         (125 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0276200  Isochorismatase hydrolase family protein            234   1e-62
Os02g0276400  Isochorismatase hydrolase family protein            169   5e-43

>Os02g0276200 Isochorismatase hydrolase family protein
          Length = 125

 Score =  234 bits (596), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/125 (92%), Positives = 116/125 (92%)

Query: 1   MQKDFVDPATSSAALLAGEAILPXXXXXXXXXRQRGIFIVWVVREHDPSGRDVELFRRHF 60
           MQKDFVDPATSSAALLAGEAILP         RQRGIFIVWVVREHDPSGRDVELFRRHF
Sbjct: 1   MQKDFVDPATSSAALLAGEAILPTVTAAVAVARQRGIFIVWVVREHDPSGRDVELFRRHF 60

Query: 61  YSSGKGLGVEGSKGAELADGLTIKDGDYKLVKTRFSAFFATHLDSVLKTSGIKNLVIVGK 120
           YSSGKGLGVEGSKGAELADGLTIKDGDYKLVKTRFSAFFATHLDSVLKTSGIKNLVIVGK
Sbjct: 61  YSSGKGLGVEGSKGAELADGLTIKDGDYKLVKTRFSAFFATHLDSVLKTSGIKNLVIVGK 120

Query: 121 HKIYI 125
           HKIYI
Sbjct: 121 HKIYI 125



>Os02g0276400 Isochorismatase hydrolase family protein
          Length = 236

 Score =  169 bits (427), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 83/120 (69%), Positives = 96/120 (80%), Gaps = 1/120 (0%)

Query: 1   MQKDFVDPATSSAALL-AGEAILPXXXXXXXXXRQRGIFIVWVVREHDPSGRDVELFRRH 59
           MQKDFVDPA  S  L+  G+A++P         R+RGI++VWVVREHDPSG DVE+FRR 
Sbjct: 58  MQKDFVDPAMRSPMLVDGGQAVVPTVAEAVAVARERGIYVVWVVREHDPSGADVEIFRRR 117

Query: 60  FYSSGKGLGVEGSKGAELADGLTIKDGDYKLVKTRFSAFFATHLDSVLKTSGIKNLVIVG 119
           +YS GKG  V+G KGA+LADGL IK+G+YKLVKTRFSAFFAT LDSVLKTSGIK LVIVG
Sbjct: 118 YYSGGKGPTVKGLKGADLADGLVIKEGEYKLVKTRFSAFFATPLDSVLKTSGIKKLVIVG 177



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,910,913
Number of extensions: 148455
Number of successful extensions: 191
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 2
Length of query: 125
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 37
Effective length of database: 12,440,969
Effective search space: 460315853
Effective search space used: 460315853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)