BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0260500 Os02g0260500|Os02g0260500
         (711 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0260500  Conserved hypothetical protein                     1088   0.0  
Os06g0508000  Hypothetical protein                                211   2e-54

>Os02g0260500 Conserved hypothetical protein
          Length = 711

 Score = 1088 bits (2815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/637 (84%), Positives = 538/637 (84%)

Query: 75  CTPSPSWKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLGASLWEIHDVMXXXX 134
           CTPSPSWK                                   QLGASLWEIHDVM    
Sbjct: 75  CTPSPSWKLEGEEVEVAAGELAPVHPAVAPARRSSASASASARQLGASLWEIHDVMREGR 134

Query: 135 XXXXXXXXXXXXXXXXXXELHQNTSGFYTLFLGIGKKNSGGFGRHIADSSTNHQKLNQAR 194
                             ELHQNTSGFYTLFLGIGKKNSGGFGRHIADSSTNHQKLNQAR
Sbjct: 135 GGGSRRRRSGRPLASAGGELHQNTSGFYTLFLGIGKKNSGGFGRHIADSSTNHQKLNQAR 194

Query: 195 NCTAQPFSPGSYRSSVGDSSINQAISPARSLDIKGRFRGADYNLKTSTELLKVLNRIWSL 254
           NCTAQPFSPGSYRSSVGDSSINQAISPARSLDIKGRFRGADYNLKTSTELLKVLNRIWSL
Sbjct: 195 NCTAQPFSPGSYRSSVGDSSINQAISPARSLDIKGRFRGADYNLKTSTELLKVLNRIWSL 254

Query: 255 EEQHTADMSAINGLKLELQHAQEHIQELKCERRGYRHDVASLVRQLSEDKLVRKNKDKEK 314
           EEQHTADMSAINGLKLELQHAQEHIQELKCERRGYRHDVASLVRQLSEDKLVRKNKDKEK
Sbjct: 255 EEQHTADMSAINGLKLELQHAQEHIQELKCERRGYRHDVASLVRQLSEDKLVRKNKDKEK 314

Query: 315 IAADIHXXXXXXXXXXXXXXXXXXXXXKFGKELSEIKSAFVKAVXXXXXXXXXXXXXXXX 374
           IAADIH                     KFGKELSEIKSAFVKAV                
Sbjct: 315 IAADIHSLQDELEDERRLRRHSEDLHRKFGKELSEIKSAFVKAVKDLEKEKKTKNLLEDL 374

Query: 375 CDQFAMGIRDYEEEVRALKQRHVNYEYQFDKSVLHVSEAWLDERMQMQNTDVKEDSLKKS 434
           CDQFAMGIRDYEEEVRALKQRHVNYEYQFDKSVLHVSEAWLDERMQMQNTDVKEDSLKKS
Sbjct: 375 CDQFAMGIRDYEEEVRALKQRHVNYEYQFDKSVLHVSEAWLDERMQMQNTDVKEDSLKKS 434

Query: 435 TITERLRSEIEAFLLAKRSVSFKNNDNYMHDSRPNARLRRQSLESVHFNGATSAPQLAEX 494
           TITERLRSEIEAFLLAKRSVSFKNNDNYMHDSRPNARLRRQSLESVHFNGATSAPQLAE 
Sbjct: 435 TITERLRSEIEAFLLAKRSVSFKNNDNYMHDSRPNARLRRQSLESVHFNGATSAPQLAED 494

Query: 495 XXXXSVASDLHCFELNMHGSSIQMHDHTGPRRSYTGNMDAPKRRTEYSHSVVGESSHMSD 554
               SVASDLHCFELNMHGSSIQMHDHTGPRRSYTGNMDAPKRRTEYSHSVVGESSHMSD
Sbjct: 495 DDDDSVASDLHCFELNMHGSSIQMHDHTGPRRSYTGNMDAPKRRTEYSHSVVGESSHMSD 554

Query: 555 VQIYSQCNKARSSSSRPWHATRTQEIDSQASARTVPADEQNEIPCPHISQGYHNGTTSKN 614
           VQIYSQCNKARSSSSRPWHATRTQEIDSQASARTVPADEQNEIPCPHISQGYHNGTTSKN
Sbjct: 555 VQIYSQCNKARSSSSRPWHATRTQEIDSQASARTVPADEQNEIPCPHISQGYHNGTTSKN 614

Query: 615 NLGAHADCLGQESLDHYSRASLFCDGTTSGDLCNPHSPSRQLDYPSASLGHDIGECSTGL 674
           NLGAHADCLGQESLDHYSRASLFCDGTTSGDLCNPHSPSRQLDYPSASLGHDIGECSTGL
Sbjct: 615 NLGAHADCLGQESLDHYSRASLFCDGTTSGDLCNPHSPSRQLDYPSASLGHDIGECSTGL 674

Query: 675 LVGMKENTLKAKLLQARLEGRHARLKASGGSVTSRRK 711
           LVGMKENTLKAKLLQARLEGRHARLKASGGSVTSRRK
Sbjct: 675 LVGMKENTLKAKLLQARLEGRHARLKASGGSVTSRRK 711



>Os06g0508000 Hypothetical protein
          Length = 294

 Score =  211 bits (536), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/294 (45%), Positives = 179/294 (60%), Gaps = 2/294 (0%)

Query: 419 MQMQNTDVKEDSLKKSTITERLRSEIEAFLLAKRSVSFKNNDNYMHDSRPNARLRRQSLE 478
           MQMQN D K    ++ +ITERL SEI +FL  +RS   K++  Y+ + + +A L RQSLE
Sbjct: 1   MQMQNADPKATLAERISITERLSSEIHSFLNTRRSSKPKDDKLYISNEKQDASLCRQSLE 60

Query: 479 SVHFNGATSAPQLAEXXXXXSVASDLHCFELNMHGSSIQMHDHTGPRRSYTGNMDAPKRR 538
           SVH +GATSAP+LAE     SVASDLHCFEL+MHG +IQ +D  G R+  T  M +P RR
Sbjct: 61  SVHLHGATSAPRLAEDDNDNSVASDLHCFELSMHGHTIQNNDLIGTRQRVTSCMYSPMRR 120

Query: 539 TEYSHSVVGESSHMSDVQIYSQCNKARSSSSRPWHATRTQEIDSQASARTVPADEQNEIP 598
            E+S+ +  E S +S +   S  +KAR +  R      T EI     A+  P   Q+E  
Sbjct: 121 LEFSNGIPVEGSRISTMSPCSMKDKARPNGIREQLNASTPEISPCNDAKNAPRCAQDETV 180

Query: 599 CPHISQGYHNGTTSKNNLGAHADCLGQESLDHYSRASLFCDG-TTSGDLCNPHSPSRQLD 657
              +SQ  H+      +       LGQ+S DH+SRA  F D  TTSG++ +  SP+RQL+
Sbjct: 181 MTQVSQRLHDDLLKIKSEAPQHAYLGQKSNDHHSRAGQFRDQCTTSGNVYDLCSPARQLN 240

Query: 658 YPSASLGHDIGECSTGLLVGMKENTLKAKLLQARLEGRHARLKASGGSVTSRRK 711
             S SL H+I E S    +  K  TLKAKLLQARLEG+HAR++ASG S+TS R+
Sbjct: 241 QRS-SLDHEITEASPTHPLEGKSTTLKAKLLQARLEGQHARMRASGYSLTSTRR 293



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.128    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,762,447
Number of extensions: 662759
Number of successful extensions: 1764
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1761
Number of HSP's successfully gapped: 3
Length of query: 711
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 603
Effective length of database: 11,396,689
Effective search space: 6872203467
Effective search space used: 6872203467
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)