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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0508000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.0188) R2 : 0.00796
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0758 (0.0396) R2dN8 : 0.0103 R2N8 : 0.00796
σ : 0.355
deviance : 57.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.7 0.344 2.88 -0.162 0.0532 -0.297 -0.52 1.21 0.0499 5.53 1.002 16 -- --
54.9 0.345 2.87 -0.115 0.063 -0.209 -0.643 -- 0.0636 5.18 1 16 -- --
54.34 0.343 2.88 -0.166 0.0525 -0.3 -- 1.36 0.052 5.86 1.1 16 -- --
55.86 0.348 2.86 -0.119 0.078 -0.191 -- -- 0.0633 6.99 1 16 -- --
54.47 0.344 2.88 -0.172 -- -0.328 -- 1.38 0.0513 -- 1.092 16 -- --
55.86 0.35 2.87 -0.0888 0.121 -- -0.609 -- 0.0606 5.28 -- -- -- --
56.76 0.353 2.86 -0.089 0.12 -- -- -- 0.0636 5.98 -- -- -- --
56.11 0.349 2.86 -0.116 -- -0.233 -- -- 0.0671 -- 1.035 16 -- --
56.18 0.349 2.86 -- 0.0746 -0.188 -- -- 0.078 7.16 1.017 16 -- --
57.5 0.354 2.87 -0.0854 -- -- -- -- 0.0663 -- -- -- -- --
56.97 0.353 2.86 -- 0.118 -- -- -- 0.0735 6.01 -- -- -- --
56.46 0.35 2.86 -- -- -0.217 -- -- 0.0797 -- 1.046 16 -- --
57.69 0.355 2.86 -- -- -- -- -- 0.0758 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.33 temperature 20.0 30 > th dose dependent rect. 2 1
3 42.51 wind 3.0 30 < th dose dependent rect. 2 1
4 42.52 temperature 20.0 30 > th dose independent rect. 2 1
5 42.57 atmosphere 1005.0 30 > th dose dependent rect. 2 1
8 42.62 atmosphere 1005.0 30 > th dose independent rect. 2 1
10 42.67 wind 3.0 30 < th dose independent rect. 2 1
11 42.67 humidity 80.0 30 > th dose independent rect. 2 1
16 42.76 humidity 70.0 30 > th dose dependent rect. 2 1
25 42.84 temperature 10.0 30 > th dose independent rect. 2 1
27 42.84 temperature 30.0 30 < th dose independent rect. 2 1
28 42.84 humidity 50.0 30 > th dose independent rect. 2 1
32 42.84 atmosphere 1010.0 30 < th dose independent rect. 2 1
34 42.84 radiation 1.0 30 < th dose independent rect. 2 1
39 42.84 precipitation 0.1 30 < th dose independent rect. 2 1
40 42.84 temperature 10.0 30 > th dose independent rect. 3 23
41 42.84 radiation 1.0 30 < th dose dependent rect. 2 1
46 42.84 precipitation 0.1 30 < th dose dependent rect. 2 1
49 43.23 atmosphere 1015.0 30 < th dose dependent rect. 2 1
54 43.74 temperature 30.0 30 < th dose dependent rect. 2 1
61 44.25 wind 1.0 30 > th dose independent rect. 2 1
100 45.24 wind 9.0 1440 < th dose independent rect. 3 1
101 45.24 temperature 10.0 1440 > th dose independent rect. 3 1
104 45.24 temperature 30.0 1440 < th dose independent rect. 3 1
108 45.24 humidity 50.0 1440 > th dose independent rect. 3 1
117 45.24 atmosphere 995.0 1440 > th dose independent rect. 3 1
118 45.24 radiation 1.0 1440 < th dose independent rect. 3 1
138 45.24 temperature 10.0 1440 > th dose independent rect. 4 23
141 45.24 radiation 1.0 1440 < th dose dependent rect. 3 1
150 45.24 radiation 20.0 43200 < th dose dependent rect. 3 1
159 45.67 wind 9.0 30 < th dose independent rect. 3 23
163 46.26 atmosphere 995.0 30 > th dose independent rect. 3 23
168 47.03 humidity 90.0 30 > th dose independent rect. 8 2
170 47.05 humidity 90.0 30 > th dose dependent rect. 8 2
210 47.42 precipitation 0.1 30 < th dose independent rect. 3 23
211 47.42 precipitation 0.1 30 < th dose dependent rect. 3 23
230 48.56 radiation 10.0 90 < th dose independent rect. 8 1
240 49.06 temperature 25.0 270 > th dose independent rect. 23 4
244 49.41 radiation 10.0 90 < th dose dependent rect. 8 1
285 50.08 humidity 50.0 30 > th dose independent rect. 3 23
309 50.54 temperature 30.0 30 < th dose independent rect. 3 23
325 50.70 wind 1.0 90 < th dose dependent rect. 8 1
326 50.71 wind 1.0 10 > th dose independent rect. 8 23
329 50.75 precipitation 0.1 270 > th dose independent rect. 8 1
330 50.75 precipitation 0.1 270 > th dose dependent rect. 8 1
344 51.00 radiation 1.0 10 > th dose dependent rect. 7 1
353 51.19 precipitation 0.1 270 > th dose independent rect. 6 3
354 51.19 precipitation 0.1 270 > th dose dependent rect. 6 3
366 51.33 atmosphere 1005.0 30 > th dose dependent rect. 7 1
369 51.34 temperature 25.0 90 < th dose dependent rect. 6 1
374 51.36 radiation 30.0 10 > th dose dependent rect. 15 17
382 51.45 radiation 10.0 10 < th dose dependent rect. 3 23
385 51.48 temperature 25.0 10 < th dose independent rect. 7 1
391 51.49 wind 1.0 90 < th dose independent rect. 8 1
424 51.60 radiation 1.0 270 < th dose dependent rect. 6 7
425 51.60 radiation 10.0 10 > th dose dependent rect. 16 16
430 51.64 radiation 1.0 270 > th dose independent rect. 4 1
441 51.64 radiation 1.0 270 > th dose dependent rect. 4 1
456 51.66 temperature 10.0 720 > th dose independent rect. 15 8
458 51.66 temperature 10.0 720 > th dose independent rect. 23 16
497 51.73 atmosphere 995.0 720 > th dose independent rect. 23 16
501 51.74 radiation 1.0 270 < th dose independent rect. 7 6
517 51.79 radiation 30.0 10 > th dose independent rect. 15 17
521 51.81 atmosphere 995.0 720 > th dose independent rect. 15 8
528 51.86 temperature 10.0 720 > th dose independent rect. 3 8
529 51.86 atmosphere 995.0 720 > th dose independent rect. 3 8
531 51.86 temperature 10.0 720 > th dose independent rect. 11 16
554 51.96 radiation 10.0 10 > th dose independent rect. 7 1
559 51.98 atmosphere 995.0 720 > th dose independent rect. 11 16
568 52.01 humidity 90.0 30 < th dose dependent rect. 7 1
574 52.08 radiation 10.0 10 < th dose independent rect. 3 23
598 52.16 humidity 90.0 90 < th dose dependent rect. 5 3
617 52.19 humidity 90.0 30 < th dose independent rect. 7 1
618 52.20 temperature 25.0 1440 < th dose independent rect. 1 2
619 52.20 wind 9.0 720 < th dose independent rect. 3 8
624 52.22 temperature 25.0 1440 > th dose dependent rect. 1 1
627 52.23 temperature 20.0 270 < th dose independent rect. 4 1
659 52.31 wind 5.0 30 < th dose independent rect. 7 1
666 52.33 humidity 50.0 720 > th dose independent rect. 3 8
672 52.35 precipitation 0.1 720 < th dose independent rect. 3 8
673 52.35 precipitation 0.1 720 < th dose dependent rect. 3 8
679 52.38 precipitation 0.1 720 < th dose independent rect. 15 8
688 52.38 precipitation 0.1 720 < th dose dependent rect. 15 8
708 52.46 atmosphere 1005.0 30 > th dose independent rect. 7 1
716 52.50 atmosphere 1000.0 30 > th dose independent rect. 8 23
717 52.50 atmosphere 1015.0 30 < th dose independent rect. 3 23
752 52.54 wind 1.0 30 > th dose independent rect. 7 1
759 52.57 temperature 25.0 270 < th dose independent rect. 19 9
764 52.57 atmosphere 1000.0 30 > th dose dependent rect. 2 6
800 52.61 precipitation 0.1 1440 < th dose independent rect. 8 1
802 52.61 precipitation 0.1 1440 < th dose dependent rect. 8 1
815 52.65 wind 1.0 10 < th dose independent rect. 13 14
822 52.66 precipitation 0.1 720 < th dose independent rect. 23 16
824 52.66 precipitation 0.1 720 < th dose dependent rect. 23 16
836 52.67 wind 9.0 30 < th dose independent rect. 8 23
846 52.70 wind 9.0 1440 < th dose independent rect. 8 1
849 52.70 temperature 10.0 1440 > th dose independent rect. 8 1
854 52.70 humidity 50.0 1440 > th dose independent rect. 8 1
856 52.70 atmosphere 995.0 1440 > th dose independent rect. 8 1
859 52.70 atmosphere 1015.0 1440 < th dose independent rect. 8 1
860 52.70 precipitation 0.1 720 < th dose independent rect. 11 16
861 52.70 temperature 10.0 1440 > th dose independent rect. 9 23
865 52.70 precipitation 0.1 720 < th dose dependent rect. 11 16
866 52.71 atmosphere 1010.0 30 < th dose independent rect. 7 1
878 52.74 temperature 10.0 30 > th dose independent rect. 7 1
881 52.74 humidity 50.0 30 > th dose independent rect. 7 1
885 52.74 atmosphere 995.0 30 > th dose independent rect. 7 1
888 52.74 precipitation 0.1 30 < th dose independent rect. 7 1
889 52.74 temperature 10.0 30 > th dose independent rect. 8 23
891 52.74 precipitation 0.1 30 < th dose dependent rect. 7 1
898 52.76 temperature 25.0 10 < th dose independent rect. 2 7
900 52.76 wind 1.0 720 > th dose independent rect. 15 8
915 52.79 wind 1.0 10 > th dose independent rect. 18 13
916 52.79 temperature 20.0 270 < th dose dependent rect. 4 1
921 52.80 precipitation 0.1 30 < th dose independent rect. 8 23
923 52.80 precipitation 0.1 30 < th dose dependent rect. 8 23
949 52.84 humidity 80.0 90 < th dose independent rect. 5 2
953 52.85 humidity 70.0 90 < th dose independent rect. 18 14
954 52.85 radiation 30.0 10 > th dose dependent rect. 7 2