BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0260400 Os02g0260400|AK102256
         (110 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0260400  Protein of unknown function DUF37 family protein    199   3e-52
Os11g0706100  Protein of unknown function DUF37 family protein    174   9e-45

>Os02g0260400 Protein of unknown function DUF37 family protein
          Length = 110

 Score =  199 bits (506), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/110 (88%), Positives = 97/110 (88%)

Query: 1   MAVSXXXXXXXXXXXXXGSTLSFGVPYQNKRRILTMRVYCAADEGEISPLLPSSCRYVPT 60
           MAVS             GSTLSFGVPYQNKRRILTMRVYCAADEGEISPLLPSSCRYVPT
Sbjct: 1   MAVSALLPPIAAAPPLAGSTLSFGVPYQNKRRILTMRVYCAADEGEISPLLPSSCRYVPT 60

Query: 61  CSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPPRWFDEEELPKQ 110
           CSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPPRWFDEEELPKQ
Sbjct: 61  CSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPPRWFDEEELPKQ 110



>Os11g0706100 Protein of unknown function DUF37 family protein
          Length = 127

 Score =  174 bits (442), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 87/113 (76%), Positives = 89/113 (78%), Gaps = 20/113 (17%)

Query: 18  GSTLSFGVPYQNKRRILTMRVYCAADEGE--------------------ISPLLPSSCRY 57
           G+TLSFGVPYQNKRRI TMRVYCAADE E                    ISPLLPSSCRY
Sbjct: 15  GTTLSFGVPYQNKRRIPTMRVYCAADEEEEVNDLGVNVALSMLKFYKREISPLLPSSCRY 74

Query: 58  VPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPPRWFDEEELPKQ 110
           VPTCS+YSMQAYKKYGVAKGTILTAWRLC CNPLGGHGYDPPRWF EEELPKQ
Sbjct: 75  VPTCSQYSMQAYKKYGVAKGTILTAWRLCHCNPLGGHGYDPPRWFGEEELPKQ 127



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,122,565
Number of extensions: 156697
Number of successful extensions: 216
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 2
Length of query: 110
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 33
Effective length of database: 13,015,323
Effective search space: 429505659
Effective search space used: 429505659
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)