BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0235600 Os02g0235600|AK120417
         (182 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0235600  Similar to 60S ribosomal protein L11-2 (L16). ...   340   3e-94
Os06g0550000  Similar to 60S ribosomal protein L11-2 (L16). ...   337   3e-93
Os05g0207300  Similar to 60S ribosomal protein L11-2 (L16). ...   337   3e-93
AK062150                                                          337   3e-93
Os01g0205500  Similar to 60S ribosomal protein L11-2 (L16). ...   336   6e-93
AK063597                                                          234   3e-62

>Os02g0235600 Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2
          Length = 182

 Score =  340 bits (872), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 167/182 (91%), Positives = 167/182 (91%)

Query: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
           MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG
Sbjct: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFYVVLEXXXXXXXXXXXXXXXVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180
           STGIYGMDFYVVLE               VGIQHRVTKEDAMKWFQVKYEGVILNKAQAN
Sbjct: 121 STGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180

Query: 181 TS 182
           TS
Sbjct: 181 TS 182



>Os06g0550000 Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2
          Length = 182

 Score =  337 bits (864), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 165/182 (90%), Positives = 167/182 (91%)

Query: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
           MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFYVVLEXXXXXXXXXXXXXXXVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180
           STGIYGMDFYVVLE               VGIQHRVTKEDAMKWFQVKYEGVILNKAQAN
Sbjct: 121 STGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180

Query: 181 TS 182
           TS
Sbjct: 181 TS 182



>Os05g0207300 Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2
          Length = 182

 Score =  337 bits (864), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 165/182 (90%), Positives = 167/182 (91%)

Query: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
           MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFYVVLEXXXXXXXXXXXXXXXVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180
           STGIYGMDFYVVLE               VGIQHRVTKEDAMKWFQVKYEGVILNKAQAN
Sbjct: 121 STGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180

Query: 181 TS 182
           TS
Sbjct: 181 TS 182



>AK062150 
          Length = 182

 Score =  337 bits (864), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 165/182 (90%), Positives = 167/182 (91%)

Query: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
           MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFYVVLEXXXXXXXXXXXXXXXVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180
           STGIYGMDFYVVLE               VGIQHRVTKEDAMKWFQVKYEGVILNKAQAN
Sbjct: 121 STGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180

Query: 181 TS 182
           TS
Sbjct: 181 TS 182



>Os01g0205500 Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2
          Length = 182

 Score =  336 bits (861), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 164/182 (90%), Positives = 167/182 (91%)

Query: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
           MASEKKQ+NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKQANPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFYVVLEXXXXXXXXXXXXXXXVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180
           STGIYGMDFYVVLE               VGIQHRVTKEDAMKWFQVKYEGVILNKAQAN
Sbjct: 121 STGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180

Query: 181 TS 182
           TS
Sbjct: 181 TS 182



>AK063597 
          Length = 199

 Score =  234 bits (596), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 108/172 (62%), Positives = 138/172 (80%)

Query: 3   SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
           ++ K  NPMR+IK+ KL LNIS GE+G+RL +A+KVLEQL+GQTPVFSKAR T+R+FGIR
Sbjct: 27  TKAKSGNPMRQIKIAKLCLNISPGETGERLQKAAKVLEQLTGQTPVFSKARLTIRTFGIR 86

Query: 63  RNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPST 122
           RNEKIA + TVRGEKA +LL  GL+VK++EL + NFS++G FGFGIQEHIDLG+KYDPS 
Sbjct: 87  RNEKIAVHATVRGEKAAELLRRGLRVKDFELRKHNFSESGQFGFGIQEHIDLGLKYDPSI 146

Query: 123 GIYGMDFYVVLEXXXXXXXXXXXXXXXVGIQHRVTKEDAMKWFQVKYEGVIL 174
           GI+GMDF+VVLE               VG QH+VTK++AMK+FQ K++G++L
Sbjct: 147 GIFGMDFFVVLERPGCRVSRRKRAVASVGKQHKVTKKEAMKFFQEKFDGILL 198



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,802,673
Number of extensions: 160088
Number of successful extensions: 267
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 6
Length of query: 182
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 87
Effective length of database: 12,075,471
Effective search space: 1050565977
Effective search space used: 1050565977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)