Os01g0205500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2.
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Os01g0205500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.8 | 0.42 | 12.5 | -0.229 | 0.816 | 0.886 | 0.763 | -1.6 | -0.243 | 16.9 | 20.5 | 2715 | -- | -- |
| 84.31 | 0.428 | 12.4 | 0.0562 | 0.838 | 1.15 | 0.77 | -- | -0.189 | 16.7 | 20.4 | 2684 | -- | -- |
| 81.26 | 0.42 | 12.5 | -0.241 | 0.816 | 0.88 | -- | -1.68 | -0.239 | 16.8 | 20.56 | 2714 | -- | -- |
| 86.07 | 0.432 | 12.4 | 0.0696 | 0.82 | 1.17 | -- | -- | -0.173 | 16.8 | 20.3 | 2672 | -- | -- |
| 116.31 | 0.502 | 12.5 | -0.287 | -- | 0.815 | -- | -1.75 | -0.269 | -- | 20.67 | 3326 | -- | -- |
| 111.79 | 0.496 | 12.3 | 0.689 | 0.763 | -- | 1.09 | -- | 0.131 | 17.1 | -- | -- | -- | -- |
| 114.73 | 0.502 | 12.3 | 0.69 | 0.769 | -- | -- | -- | 0.136 | 17 | -- | -- | -- | -- |
| 119.58 | 0.509 | 12.4 | -0.0272 | -- | 1.31 | -- | -- | -0.178 | -- | 19.3 | 3325 | -- | -- |
| 86.15 | 0.432 | 12.4 | -- | 0.825 | 1.19 | -- | -- | -0.179 | 16.8 | 20.3 | 2672 | -- | -- |
| 145.87 | 0.564 | 12.3 | 0.662 | -- | -- | -- | -- | 0.116 | -- | -- | -- | -- | -- |
| 127.28 | 0.528 | 12.4 | -- | 0.757 | -- | -- | -- | 0.0592 | 17 | -- | -- | -- | -- |
| 119.59 | 0.509 | 12.4 | -- | -- | 1.29 | -- | -- | -0.167 | -- | 19.39 | 3325 | -- | -- |
| 157.43 | 0.586 | 12.3 | -- | -- | -- | -- | -- | 0.0429 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 2 | 78.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 9 | 79.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 10 | 79.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 15 | 79.28 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 16 | 79.28 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 20 | 79.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 27 | 79.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 112 | 80.13 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 137 | 80.29 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 170 | 80.54 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 181 | 80.60 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 242 | 80.85 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 305 | 81.16 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 474 | 81.97 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 520 | 82.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 538 | 82.25 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 551 | 82.25 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 647 | 82.60 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 651 | 82.62 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 656 | 82.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 660 | 82.64 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 22 |
| 661 | 82.64 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 672 | 82.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 15 |
| 698 | 82.75 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 704 | 82.76 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 708 | 82.77 | humidity | 90 | 14400 | > th | dose dependent | rect. | 10 | 22 |
| 728 | 82.82 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 736 | 82.84 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 740 | 82.85 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 763 | 82.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 23 |
| 764 | 82.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 783 | 82.92 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 824 | 82.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 864 | 83.06 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 866 | 83.06 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 3 |
| 875 | 83.07 | temperature | 15 | 4320 | > th | dose dependent | rect. | 19 | 5 |
| 948 | 83.19 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 7 |
| 974 | 83.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 3 |