Os02g0235600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0235600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.82 | 0.311 | 9.83 | 0.733 | 0.143 | -1.91 | -0.0137 | -0.649 | 0.161 | 18.4 | 23.89 | 4154 | -- | -- |
| 44.17 | 0.31 | 9.84 | 0.665 | 0.122 | -1.75 | -0.00217 | -- | 0.15 | 17.9 | 24.63 | 4071 | -- | -- |
| 43.81 | 0.308 | 9.83 | 0.736 | 0.142 | -1.93 | -- | -0.708 | 0.162 | 18.4 | 23.78 | 4153 | -- | -- |
| 43.8 | 0.308 | 9.85 | 0.806 | 0.159 | -1.79 | -- | -- | 0.153 | 18.3 | 25.64 | 2881 | -- | -- |
| 44.69 | 0.311 | 9.84 | 0.755 | -- | -1.84 | -- | -0.1 | 0.145 | -- | 25.16 | 3334 | -- | -- |
| 96.96 | 0.462 | 9.74 | 1.56 | 0.115 | -- | 0.0136 | -- | 0.611 | 20.8 | -- | -- | -- | -- |
| 96.96 | 0.461 | 9.74 | 1.56 | 0.115 | -- | -- | -- | 0.611 | 20.8 | -- | -- | -- | -- |
| 44.69 | 0.311 | 9.85 | 0.745 | -- | -1.82 | -- | -- | 0.145 | -- | 25.34 | 3329 | -- | -- |
| 50.22 | 0.33 | 9.87 | -- | 0.139 | -1.76 | -- | -- | 0.0406 | 18.5 | 21.94 | 28748 | -- | -- |
| 97.71 | 0.462 | 9.74 | 1.56 | -- | -- | -- | -- | 0.61 | -- | -- | -- | -- | -- |
| 161.31 | 0.594 | 9.78 | -- | 0.115 | -- | -- | -- | 0.437 | 21.8 | -- | -- | -- | -- |
| 50.72 | 0.332 | 9.87 | -- | -- | -1.79 | -- | -- | 0.0264 | -- | 22.05 | 28816 | -- | -- |
| 162.1 | 0.594 | 9.78 | -- | -- | -- | -- | -- | 0.437 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.86 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 8 | 44.13 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 12 | 44.15 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 12 |
| 22 | 44.20 | temperature | 25 | 4320 | < th | dose dependent | rect. | 14 | 16 |
| 34 | 44.24 | temperature | 25 | 4320 | < th | dose dependent | rect. | 9 | 22 |
| 38 | 44.25 | temperature | 25 | 4320 | < th | dose dependent | rect. | 11 | 20 |
| 52 | 44.31 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 21 |
| 64 | 44.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 19 |
| 84 | 44.37 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 103 | 44.39 | temperature | 25 | 4320 | < th | dose dependent | rect. | 19 | 21 |
| 123 | 44.42 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 135 | 44.44 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 23 |
| 149 | 44.47 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 166 | 44.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 12 | 19 |
| 178 | 44.54 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 13 |
| 183 | 44.55 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 212 | 44.62 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 304 | 44.88 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 357 | 45.00 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 466 | 45.25 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 467 | 45.26 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 495 | 45.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 508 | 45.37 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 528 | 45.41 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 543 | 45.45 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 556 | 45.48 | humidity | 60 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 578 | 45.51 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 10 |
| 601 | 45.55 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 624 | 45.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 676 | 45.72 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 698 | 45.77 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 725 | 45.83 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 734 | 45.84 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 767 | 45.88 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 842 | 46.03 | temperature | 15 | 4320 | > th | dose dependent | sin | 11 | NA |
| 986 | 46.22 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 7 |