BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0235600 Os02g0235600|AK120417
(182 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G42740.1 | chr2:17791794-17792946 FORWARD LENGTH=183 324 1e-89
AT5G45775.2 | chr5:18565281-18566496 REVERSE LENGTH=183 324 2e-89
AT4G18730.1 | chr4:10302238-10303206 FORWARD LENGTH=183 324 2e-89
AT3G58700.1 | chr3:21711661-21712816 FORWARD LENGTH=183 324 2e-89
AT4G01310.1 | chr4:544166-545480 REVERSE LENGTH=263 49 2e-06
>AT2G42740.1 | chr2:17791794-17792946 FORWARD LENGTH=183
Length = 182
Score = 324 bits (831), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 160/181 (88%), Positives = 163/181 (90%)
Query: 1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
MASEKK SNPMR+IKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG
Sbjct: 1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
Query: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Query: 121 STGIYGMDFYVVLEXXXXXXXXXXXXXXXVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180
STGIYGMDFYVVLE VGIQHRVTK+DAMKWFQVKYEGVILNK+Q
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
Query: 181 T 181
T
Sbjct: 181 T 181
>AT5G45775.2 | chr5:18565281-18566496 REVERSE LENGTH=183
Length = 182
Score = 324 bits (830), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 160/181 (88%), Positives = 163/181 (90%)
Query: 1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
MASEKK SNPMR+IKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG
Sbjct: 1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
Query: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Query: 121 STGIYGMDFYVVLEXXXXXXXXXXXXXXXVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180
STGIYGMDFYVVLE VGIQHRVTK+DAMKWFQVKYEGVILNK+Q
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
Query: 181 T 181
T
Sbjct: 181 T 181
>AT4G18730.1 | chr4:10302238-10303206 FORWARD LENGTH=183
Length = 182
Score = 324 bits (830), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 160/181 (88%), Positives = 163/181 (90%)
Query: 1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
MASEKK SNPMR+IKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG
Sbjct: 1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
Query: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Query: 121 STGIYGMDFYVVLEXXXXXXXXXXXXXXXVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180
STGIYGMDFYVVLE VGIQHRVTK+DAMKWFQVKYEGVILNK+Q
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
Query: 181 T 181
T
Sbjct: 181 T 181
>AT3G58700.1 | chr3:21711661-21712816 FORWARD LENGTH=183
Length = 182
Score = 324 bits (830), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 160/181 (88%), Positives = 163/181 (90%)
Query: 1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
MASEKK SNPMR+IKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG
Sbjct: 1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
Query: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Query: 121 STGIYGMDFYVVLEXXXXXXXXXXXXXXXVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180
STGIYGMDFYVVLE VGIQHRVTK+DAMKWFQVKYEGVILNK+Q
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
Query: 181 T 181
T
Sbjct: 181 T 181
>AT4G01310.1 | chr4:544166-545480 REVERSE LENGTH=263
Length = 262
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 15 KVQKLVLNISVGESGDR---LTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYV 71
KVQK+V+N +G++ L A K + ++GQ P+ ++AR ++ +F IR ++ + V
Sbjct: 85 KVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQPLGIAV 144
Query: 72 TVRGEKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEH-IDLGIKYDPSTGI 124
T+RG+ L+ + + ++++ + +F G + G+++ + I++D
Sbjct: 145 TLRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRFDAVGKT 204
Query: 125 YGMDFYV 131
GMD +
Sbjct: 205 RGMDVCI 211
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,318,109
Number of extensions: 116960
Number of successful extensions: 237
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 5
Length of query: 182
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 90
Effective length of database: 8,584,297
Effective search space: 772586730
Effective search space used: 772586730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)