BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0230100 Os02g0230100|AK101441
         (333 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0230100  Leucine-rich repeat, SDS22 containing protein       657   0.0  
Os01g0966400  Leucine-rich repeat, SDS22 containing protein        70   3e-12

>Os02g0230100 Leucine-rich repeat, SDS22 containing protein
          Length = 333

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/333 (98%), Positives = 327/333 (98%)

Query: 1   MASGDPVDAPAAAAESMEVEADQCLDLTSCQLHDLSEVEIPPTXXXXXXTANRLAAVDPR 60
           MASGDPVDAPAAAAESMEVEADQCLDLTSCQLHDLSEVEIPPT      TANRLAAVDPR
Sbjct: 1   MASGDPVDAPAAAAESMEVEADQCLDLTSCQLHDLSEVEIPPTLEELELTANRLAAVDPR 60

Query: 61  IGRLPGLRKLSFRQNLLDDAAVAPLSTWADIAGLQELVFRDNKLTTIPDASIFKGLLVFD 120
           IGRLPGLRKLSFRQNLLDDAAVAPLSTWADIAGLQELVFRDNKLTTIPDASIFKGLLVFD
Sbjct: 61  IGRLPGLRKLSFRQNLLDDAAVAPLSTWADIAGLQELVFRDNKLTTIPDASIFKGLLVFD 120

Query: 121 VSFNEISSLKGLSKVSSTLKELYVSKNEVAKMEELEHFHALQILELGSNRLRVMENLETL 180
           VSFNEISSLKGLSKVSSTLKELYVSKNEVAKMEELEHFHALQILELGSNRLRVMENLETL
Sbjct: 121 VSFNEISSLKGLSKVSSTLKELYVSKNEVAKMEELEHFHALQILELGSNRLRVMENLETL 180

Query: 181 ANLQELWLGRNRIKTINLCSLKAIKKLSLQSNRLTSMNGLQECIALEELYLSHNGIQKME 240
           ANLQELWLGRNRIKTINLCSLKAIKKLSLQSNRLTSMNGLQECIALEELYLSHNGIQKME
Sbjct: 181 ANLQELWLGRNRIKTINLCSLKAIKKLSLQSNRLTSMNGLQECIALEELYLSHNGIQKME 240

Query: 241 GLSTLQNLRVLDVSSNKLTAIEDVETLSRLEDLWLNDNQIPSLDGIESALASSREKLTTI 300
           GLSTLQNLRVLDVSSNKLTAIEDVETLSRLEDLWLNDNQIPSLDGIESALASSREKLTTI
Sbjct: 241 GLSTLQNLRVLDVSSNKLTAIEDVETLSRLEDLWLNDNQIPSLDGIESALASSREKLTTI 300

Query: 301 YLERNPCAKAPNYSSTLKTIFPNLEQLDSDMLA 333
           YLERNPCAKAPNYSSTLKTIFPNLEQLDSDMLA
Sbjct: 301 YLERNPCAKAPNYSSTLKTIFPNLEQLDSDMLA 333



>Os01g0966400 Leucine-rich repeat, SDS22 containing protein
          Length = 463

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 111 SIFKGLLVFDVSFNEISSLKGLSKVSSTLKELYVSKNEVAKMEELEHFHALQILELGSNR 170
           S F  L   D+ +N + +L+GLS  ++ LK L V +N++  ++ +E    LQ+L  G N+
Sbjct: 37  SSFVNLERLDLGYNCLLTLEGLSNCAN-LKWLSVIENKLVSLKGVEGLSKLQVLNAGKNK 95

Query: 171 LRVMENLETLANLQELWLGRNRIKTI-NLCSLKAIKKLSLQSNRLTSM-NGLQECIALEE 228
           L+ M+ +++L +L  L L  N I +I  L  L  +  L L  N + ++ + L +  A+++
Sbjct: 96  LKTMDEVKSLTSLGALILNDNNISSICKLDQLHQLNTLVLSKNPIFTIGDALMKAKAMKK 155

Query: 229 LYLSHNGIQKM-EGLSTLQNLRVLDVSSNKLTAI-EDVETLSRLEDLWLNDNQIPSLDGI 286
           L LSH  I+K+   L+    L+ L ++ NK+T I  D+    ++ +L L +N I     +
Sbjct: 156 LSLSHCQIEKIGSSLTACVELKELRLAHNKITTIPSDLAKNVKILNLDLGNNLIERRSDL 215

Query: 287 ESALASSREKLTTIYLERNPCAKAPNYSSTLKTIFPNLEQLDS 329
           E  + S    L  + L+ NP A+    +  +K + PNL   +S
Sbjct: 216 E--VLSELHYLRNLNLQGNPIAEKDGLAKKVKKLVPNLRIFNS 256



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,601,934
Number of extensions: 342041
Number of successful extensions: 1968
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1963
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 232
Effective length of database: 11,762,187
Effective search space: 2728827384
Effective search space used: 2728827384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)