Os02g0230100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, SDS22 containing protein.
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Os02g0230100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, SDS22 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.64 | 0.459 | 6.12 | 0.413 | 1.71 | 1.17 | 0.0706 | -0.0759 | 0.179 | 12.2 | 16.75 | 8 | -- | -- |
| 95.53 | 0.455 | 6.12 | 0.42 | 1.7 | 1.18 | 0.0701 | -- | 0.184 | 12.2 | 16.8 | 4 | -- | -- |
| 95.54 | 0.455 | 6.12 | 0.424 | 1.7 | 1.16 | -- | -0.00746 | 0.186 | 12.2 | 16.8 | 4 | -- | -- |
| 95.53 | 0.455 | 6.12 | 0.425 | 1.7 | 1.17 | -- | -- | 0.184 | 12.2 | 16.8 | 4 | -- | -- |
| 229.7 | 0.706 | 6.22 | -0.00157 | -- | 2.67 | -- | -0.438 | -0.103 | -- | 17.9 | 2 | -- | -- |
| 111.59 | 0.495 | 6.08 | 0.664 | 2.03 | -- | 0.205 | -- | 0.364 | 12.6 | -- | -- | -- | -- |
| 111.77 | 0.495 | 6.08 | 0.672 | 2.03 | -- | -- | -- | 0.365 | 12.6 | -- | -- | -- | -- |
| 229.88 | 0.706 | 6.21 | 0.0654 | -- | 2.68 | -- | -- | -0.0842 | -- | 17.7 | 2 | -- | -- |
| 99.84 | 0.465 | 6.14 | -- | 1.65 | 1.48 | -- | -- | 0.112 | 12.1 | 14.79 | 4 | -- | -- |
| 370.82 | 0.9 | 6.12 | 0.601 | -- | -- | -- | -- | 0.331 | -- | -- | -- | -- | -- |
| 123.68 | 0.52 | 6.1 | -- | 2.02 | -- | -- | -- | 0.291 | 12.5 | -- | -- | -- | -- |
| 229.99 | 0.706 | 6.21 | -- | -- | 2.7 | -- | -- | -0.0935 | -- | 17.7 | 2 | -- | -- |
| 380.35 | 0.91 | 6.13 | -- | -- | -- | -- | -- | 0.264 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.77 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 33 | 92.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 19 |
| 90 | 94.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 95 | 94.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 101 | 94.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 118 | 95.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 121 | 95.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 122 | 95.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 172 | 95.77 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 20 |
| 173 | 95.77 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 180 | 95.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 183 | 95.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 190 | 95.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 195 | 95.98 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 204 | 96.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 241 | 96.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 242 | 96.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 252 | 96.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 253 | 96.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 255 | 96.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 286 | 96.71 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 322 | 97.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 323 | 97.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 341 | 97.11 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 14 |
| 375 | 97.28 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 13 |
| 403 | 97.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 409 | 97.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 421 | 97.49 | temperature | 20 | 10 | > th | dose independent | rect. | 5 | 21 |
| 432 | 97.52 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 20 |
| 470 | 97.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 500 | 97.79 | temperature | 30 | 10 | < th | dose dependent | sin | 6 | NA |
| 502 | 97.80 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 527 | 97.88 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 546 | 97.92 | temperature | 10 | 10 | > th | dose dependent | sin | 7 | NA |
| 551 | 97.94 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 572 | 97.99 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 14 |
| 575 | 97.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 629 | 98.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 646 | 98.17 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 14 |
| 661 | 98.22 | wind | 1 | 270 | > th | dose independent | rect. | 24 | 13 |
| 679 | 98.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 726 | 98.39 | temperature | 10 | 90 | > th | dose dependent | rect. | 15 | 10 |
| 864 | 98.66 | temperature | 15 | 30 | > th | dose dependent | rect. | 5 | 14 |
| 929 | 98.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 3 |
| 963 | 98.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 5 |