BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0225900 Os02g0225900|Os02g0225900
(435 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0225900 Conserved hypothetical protein 509 e-144
Os02g0225500 Conserved hypothetical protein 444 e-125
Os02g0225200 Conserved hypothetical protein 308 7e-84
Os12g0110700 145 5e-35
Os05g0136601 109 4e-24
Os02g0487400 78 1e-14
>Os02g0225900 Conserved hypothetical protein
Length = 435
Score = 509 bits (1312), Expect = e-144, Method: Compositional matrix adjust.
Identities = 276/435 (63%), Positives = 276/435 (63%)
Query: 1 MAAIQAHQRLFLASTCAGQRLRPRPSRIAAPCRAAVSGGVRTAQXXXXXXXXXXXXXXXL 60
MAAIQAHQRLFLASTCAGQRLRPRPSRIAAPCRAAVSGGVRTAQ L
Sbjct: 1 MAAIQAHQRLFLASTCAGQRLRPRPSRIAAPCRAAVSGGVRTAQSPSSSSGSGSPSSMSL 60
Query: 61 NLDWIAAVPAKEDVSGAAAVXXXXXXXXXXXXXXXXXMHDIIGRQRDNWXXXXXXXXXXX 120
NLDWIAAVPAKEDVSGAAAV MHDIIGRQRDNW
Sbjct: 61 NLDWIAAVPAKEDVSGAAAVELEKLRAIAEAAADRAEMHDIIGRQRDNWNHLLLHSNNSL 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMAAVNKIQPSQLAEEQRNATRLWRQL 180
TMAAVNKIQPSQLAEEQRNATRLWRQL
Sbjct: 121 LLAASVMAALAPAAPTVVALKASAGVLLASAAVTMAAVNKIQPSQLAEEQRNATRLWRQL 180
Query: 181 ERDVRATLALAAPVTRADVHDAMDRVXXXXXXXXXXXXXGMLEKFPKTVEPTRWWPXXXX 240
ERDVRATLALAAPVTRADVHDAMDRV GMLEKFPKTVEPTRWWP
Sbjct: 181 ERDVRATLALAAPVTRADVHDAMDRVLALDAAYPLPLLPGMLEKFPKTVEPTRWWPKKKQ 240
Query: 241 XXXXXXRAAVNKXXXXXXXXXXXXXXXXXWTPELEEEMRGILRVIKAKDEHQYITVGKMV 300
RAAVNK WTPELEEEMRGILRVIKAKDEHQYITVGKMV
Sbjct: 241 QQQQQQRAAVNKSNSFGSSSRRRGARGNGWTPELEEEMRGILRVIKAKDEHQYITVGKMV 300
Query: 301 LGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTVEHGGQLGMV 360
LGLNK NTVEHGGQLGMV
Sbjct: 301 LGLNKGLAVAGPALAGTAAVAAAFIGSGEAGAWASGAAVLGGALAAAANTVEHGGQLGMV 360
Query: 361 FELLRNCAGFYRKMQEEIEANLGEADVERREDGEVFETKVALQLGRSTSELKQFRRMASP 420
FELLRNCAGFYRKMQEEIEANLGEADVERREDGEVFETKVALQLGRSTSELKQFRRMASP
Sbjct: 361 FELLRNCAGFYRKMQEEIEANLGEADVERREDGEVFETKVALQLGRSTSELKQFRRMASP 420
Query: 421 AVKDDDVKDFAGKLF 435
AVKDDDVKDFAGKLF
Sbjct: 421 AVKDDDVKDFAGKLF 435
>Os02g0225500 Conserved hypothetical protein
Length = 435
Score = 444 bits (1142), Expect = e-125, Method: Compositional matrix adjust.
Identities = 253/441 (57%), Positives = 260/441 (58%), Gaps = 12/441 (2%)
Query: 1 MAAIQAHQRLFLASTCAGQRLRP-RPSRIAAPCRAAVSGGVRTAQXXXXXXXXXXXXXXX 59
MAA+QAH RLFLASTCAGQ+ R RPSRIAAPCRAAVSGGVRTAQ
Sbjct: 1 MAAVQAHHRLFLASTCAGQQRRLLRPSRIAAPCRAAVSGGVRTAQSPSSSSSGSGSPSSL 60
Query: 60 -LNLDWI----AAVPAKEDVSGAAAVXXXXXXXXXXXXXXXXXMHDIIGRQRDNWXXXXX 114
LNLDW+ AVP S A V MHDIIGRQRDNW
Sbjct: 61 RLNLDWVDPRVVAVPTS---SPGAQVEVEKLRAIAEAAADRAEMHDIIGRQRDNWNHLLL 117
Query: 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMAAVNKIQPSQLAEEQRNAT 174
TMAAVNKIQPSQLAEEQRNAT
Sbjct: 118 HSNNSLALAASVMAALAPAAPTVVALKASAGVLLASAAVTMAAVNKIQPSQLAEEQRNAT 177
Query: 175 RLWRQLERDVRATLALAAPVTRADVHDAMDRVXXXXXXXXXXXXXGMLEKFPKTVEPTRW 234
RLWRQLERDVR TLALAAPVTRADVHDAMDRV GML+KFPKTVEPTRW
Sbjct: 178 RLWRQLERDVRVTLALAAPVTRADVHDAMDRVLALDAAYPLPLLPGMLDKFPKTVEPTRW 237
Query: 235 WPXXXXXXXXXXRAAVNKXXXXXXXXXXXXXXXXXWTPELEEEMRGILRVIKAKDEHQYI 294
WP RA VNK WTPELEEEMRGILRVIKAKDEH+YI
Sbjct: 238 WP---KKKQQQQRAPVNKSNSFGSSSRRRGARGNGWTPELEEEMRGILRVIKAKDEHEYI 294
Query: 295 TVGKMVLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTVEHG 354
TVGKMVLGLNK NTVEHG
Sbjct: 295 TVGKMVLGLNKGLAVAGPALAGTAAVAAAFIGSGEAGAWASGAAVLGGALAAAANTVEHG 354
Query: 355 GQLGMVFELLRNCAGFYRKMQEEIEANLGEADVERREDGEVFETKVALQLGRSTSELKQF 414
GQLGMVFELLRNCAGFYRKMQEEIEANLGEADVERREDGEV ETKVALQLGRSTSELKQF
Sbjct: 355 GQLGMVFELLRNCAGFYRKMQEEIEANLGEADVERREDGEVLETKVALQLGRSTSELKQF 414
Query: 415 RRMASPAVKDDDVKDFAGKLF 435
RR+ASP+ KDDDVKDFAGKLF
Sbjct: 415 RRLASPSFKDDDVKDFAGKLF 435
>Os02g0225200 Conserved hypothetical protein
Length = 446
Score = 308 bits (788), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 180/343 (52%), Positives = 196/343 (57%), Gaps = 9/343 (2%)
Query: 98 MHDIIGRQRDNWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXTMA 156
MHDIIGRQRDNW TMA
Sbjct: 108 MHDIIGRQRDNWNHLLLHSNNSLLLAASLMAALAPAAAPTVVALKASAGVLLASAAVTMA 167
Query: 157 AVNKIQPSQLAEEQRNATRLWRQLERDVRATLALAA-PVTRADVHDAMDRVXXXXXXXXX 215
AVNKIQPSQLAEEQRNATRLWRQLERDVRATLALAA PVTRADVHDAMDRV
Sbjct: 168 AVNKIQPSQLAEEQRNATRLWRQLERDVRATLALAAAPVTRADVHDAMDRVLALDAAYPL 227
Query: 216 XXXXGMLEKFPKTVEPTRWWPXXXXXXXXXXR--AAVNKXXXXXXXXXXXXXXXXXWTPE 273
ML+KFP VEP RWWP AA N WT E
Sbjct: 228 PLLPVMLDKFPNAVEPARWWPPTKKHQQRSPTKVAATNGTACRRATSMAGNG----WTQE 283
Query: 274 LEEEMRGILRVIKAKDEHQYITVGKMVLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 333
LEEEMRGILRVIKAKDE++Y++VGK+VL +NK
Sbjct: 284 LEEEMRGILRVIKAKDENEYVSVGKLVLAVNKRLAVAGPALAGAAALAAAFIGSAGEAGA 343
Query: 334 -XXXXXXXXXXXXXXXNTVEHGGQLGMVFELLRNCAGFYRKMQEEIEANLGEADVERRED 392
NTVEHGGQ+GMVFEL RN AG YRK+QE+IEANL EADVERRE+
Sbjct: 344 WASGAAVIGGALAAAVNTVEHGGQVGMVFELCRNVAGIYRKIQEDIEANLEEADVERREN 403
Query: 393 GEVFETKVALQLGRSTSELKQFRRMASPAVKDDDVKDFAGKLF 435
GEVFETKVALQLGRSTSEL+QFR MASPAVKD+D+++FAGKL
Sbjct: 404 GEVFETKVALQLGRSTSELRQFRAMASPAVKDEDIREFAGKLV 446
>Os12g0110700
Length = 324
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/84 (82%), Positives = 79/84 (94%)
Query: 349 NTVEHGGQLGMVFELLRNCAGFYRKMQEEIEANLGEADVERREDGEVFETKVALQLGRST 408
NTVEHGGQ+GMVF+L RN AG YRK+QE+I+ANL EADVERRE+GEVFETKVALQLGRST
Sbjct: 104 NTVEHGGQVGMVFKLCRNVAGIYRKIQEDIKANLKEADVERRENGEVFETKVALQLGRST 163
Query: 409 SELKQFRRMASPAVKDDDVKDFAG 432
SELKQFR +ASPAVKD+D+K+FAG
Sbjct: 164 SELKQFRAIASPAVKDEDIKEFAG 187
>Os05g0136601
Length = 316
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 64/86 (74%), Gaps = 19/86 (22%)
Query: 349 NTVEHGGQLGMVFELLRNCAGFYRKMQEEIEANLGEADVERREDGEVFETKVALQLGRST 408
NTVEHGGQ E+IEANL EADVERRE+GEVFETKVALQLGRST
Sbjct: 62 NTVEHGGQ-------------------EDIEANLKEADVERRENGEVFETKVALQLGRST 102
Query: 409 SELKQFRRMASPAVKDDDVKDFAGKL 434
SELKQFR +ASPAVKD+D+K+FAG L
Sbjct: 103 SELKQFRAIASPAVKDEDIKEFAGAL 128
>Os02g0487400
Length = 199
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 47/52 (90%)
Query: 382 LGEADVERREDGEVFETKVALQLGRSTSELKQFRRMASPAVKDDDVKDFAGK 433
L EADVE+RE+ +VFETKVALQLGRST ELK+F+ +ASP VKD+D+K+FAG+
Sbjct: 94 LKEADVEQRENCKVFETKVALQLGRSTLELKKFKAIASPTVKDEDIKEFAGR 145
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,916,513
Number of extensions: 246168
Number of successful extensions: 670
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 661
Number of HSP's successfully gapped: 11
Length of query: 435
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 331
Effective length of database: 11,605,545
Effective search space: 3841435395
Effective search space used: 3841435395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)