BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0225200 Os02g0225200|Os02g0225200
(446 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0225200 Conserved hypothetical protein 491 e-139
Os02g0225500 Conserved hypothetical protein 339 2e-93
Os02g0225900 Conserved hypothetical protein 325 5e-89
Os12g0110700 165 5e-41
Os05g0136601 119 4e-27
Os02g0487400 85 1e-16
>Os02g0225200 Conserved hypothetical protein
Length = 446
Score = 491 bits (1265), Expect = e-139, Method: Compositional matrix adjust.
Identities = 265/392 (67%), Positives = 265/392 (67%)
Query: 55 MAQLVAAGGGIDELRLVDERXXXXXXXXXXXPVGGCXXXXXXXXXXXXXXXXXMHDIIGR 114
MAQLVAAGGGIDELRLVDER PVGGC MHDIIGR
Sbjct: 55 MAQLVAAGGGIDELRLVDERAAVAALQQQQLPVGGCEVEKLRAVAEAAADRAEMHDIIGR 114
Query: 115 QRDNWNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMAAVNKIQP 174
QRDNWN TMAAVNKIQP
Sbjct: 115 QRDNWNHLLLHSNNSLLLAASLMAALAPAAAPTVVALKASAGVLLASAAVTMAAVNKIQP 174
Query: 175 SQLAEEQRNATRLWRQLERDVRATLALAAAPVTRADVHDAMDRVXXXXXXXXXXXXXVML 234
SQLAEEQRNATRLWRQLERDVRATLALAAAPVTRADVHDAMDRV VML
Sbjct: 175 SQLAEEQRNATRLWRQLERDVRATLALAAAPVTRADVHDAMDRVLALDAAYPLPLLPVML 234
Query: 235 DKFPNAVEPARWWPPTKKHQQRSPTKVAATNGTACRRATSMAGNGWTQELEEEMRGILRV 294
DKFPNAVEPARWWPPTKKHQQRSPTKVAATNGTACRRATSMAGNGWTQELEEEMRGILRV
Sbjct: 235 DKFPNAVEPARWWPPTKKHQQRSPTKVAATNGTACRRATSMAGNGWTQELEEEMRGILRV 294
Query: 295 IKAKDENEYVSVGKLVLAVNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 354
IKAKDENEYVSVGKLVLAVNKR
Sbjct: 295 IKAKDENEYVSVGKLVLAVNKRLAVAGPALAGAAALAAAFIGSAGEAGAWASGAAVIGGA 354
Query: 355 XXXXVNTVEHGGQVGMVFELCRNVAGIYRKIQEDIEANLEEADVERRENGEVFETKVALQ 414
VNTVEHGGQVGMVFELCRNVAGIYRKIQEDIEANLEEADVERRENGEVFETKVALQ
Sbjct: 355 LAAAVNTVEHGGQVGMVFELCRNVAGIYRKIQEDIEANLEEADVERRENGEVFETKVALQ 414
Query: 415 LGRSTSELRQFRAMASPAVKDEDIREFAGKLV 446
LGRSTSELRQFRAMASPAVKDEDIREFAGKLV
Sbjct: 415 LGRSTSELRQFRAMASPAVKDEDIREFAGKLV 446
>Os02g0225500 Conserved hypothetical protein
Length = 435
Score = 339 bits (869), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 186/339 (54%), Positives = 209/339 (61%), Gaps = 4/339 (1%)
Query: 108 MHDIIGRQRDNWNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMA 167
MHDIIGRQRDNWN TMA
Sbjct: 101 MHDIIGRQRDNWNHLLLHSNNSLALAASVMAALAPAAPTVVALKASAGVLLASAAV-TMA 159
Query: 168 AVNKIQPSQLAEEQRNATRLWRQLERDVRATLALAAAPVTRADVHDAMDRVXXXXXXXXX 227
AVNKIQPSQLAEEQRNATRLWRQLERDVR TLALAA PVTRADVHDAMDRV
Sbjct: 160 AVNKIQPSQLAEEQRNATRLWRQLERDVRVTLALAA-PVTRADVHDAMDRVLALDAAYPL 218
Query: 228 XXXXVMLDKFPNAVEPARWWPPTKKHQQRSPTKVAATNGTACRRATSMAGNGWTQELEEE 287
MLDKFP VEP RWWP K+ QQR+P + + G++ RR + GNGWT ELEEE
Sbjct: 219 PLLPGMLDKFPKTVEPTRWWPKKKQQQQRAPVNKSNSFGSSSRRRGAR-GNGWTPELEEE 277
Query: 288 MRGILRVIKAKDENEYVSVGKLVLAVNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 347
MRGILRVIKAKDE+EY++VGK+VL +NK
Sbjct: 278 MRGILRVIKAKDEHEYITVGKMVLGLNK-GLAVAGPALAGTAAVAAAFIGSGEAGAWASG 336
Query: 348 XXXXXXXXXXXVNTVEHGGQVGMVFELCRNVAGIYRKIQEDIEANLEEADVERRENGEVF 407
NTVEHGGQ+GMVFEL RN AG YRK+QE+IEANL EADVERRE+GEV
Sbjct: 337 AAVLGGALAAAANTVEHGGQLGMVFELLRNCAGFYRKMQEEIEANLGEADVERREDGEVL 396
Query: 408 ETKVALQLGRSTSELRQFRAMASPAVKDEDIREFAGKLV 446
ETKVALQLGRSTSEL+QFR +ASP+ KD+D+++FAGKL
Sbjct: 397 ETKVALQLGRSTSELKQFRRLASPSFKDDDVKDFAGKLF 435
>Os02g0225900 Conserved hypothetical protein
Length = 435
Score = 325 bits (832), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 187/342 (54%), Positives = 211/342 (61%), Gaps = 7/342 (2%)
Query: 108 MHDIIGRQRDNWNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMA 167
MHDIIGRQRDNWN TMA
Sbjct: 98 MHDIIGRQRDNWNHLLLHSNNSLLLAASVMAALAPAAPTVVALKASAGVLLASAAV-TMA 156
Query: 168 AVNKIQPSQLAEEQRNATRLWRQLERDVRATLALAAAPVTRADVHDAMDRVXXXXXXXXX 227
AVNKIQPSQLAEEQRNATRLWRQLERDVRATLAL AAPVTRADVHDAMDRV
Sbjct: 157 AVNKIQPSQLAEEQRNATRLWRQLERDVRATLAL-AAPVTRADVHDAMDRVLALDAAYPL 215
Query: 228 XXXXVMLDKFPNAVEPARWWP---PTKKHQQRSPTKVAATNGTACRRATSMAGNGWTQEL 284
ML+KFP VEP RWWP ++ QQR+ + + G++ RR + GNGWT EL
Sbjct: 216 PLLPGMLEKFPKTVEPTRWWPKKKQQQQQQQRAAVNKSNSFGSSSRRRGAR-GNGWTPEL 274
Query: 285 EEEMRGILRVIKAKDENEYVSVGKLVLAVNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXX 344
EEEMRGILRVIKAKDE++Y++VGK+VL +NK
Sbjct: 275 EEEMRGILRVIKAKDEHQYITVGKMVLGLNK-GLAVAGPALAGTAAVAAAFIGSGEAGAW 333
Query: 345 XXXXXXXXXXXXXXVNTVEHGGQVGMVFELCRNVAGIYRKIQEDIEANLEEADVERRENG 404
NTVEHGGQ+GMVFEL RN AG YRK+QE+IEANL EADVERRE+G
Sbjct: 334 ASGAAVLGGALAAAANTVEHGGQLGMVFELLRNCAGFYRKMQEEIEANLGEADVERREDG 393
Query: 405 EVFETKVALQLGRSTSELRQFRAMASPAVKDEDIREFAGKLV 446
EVFETKVALQLGRSTSEL+QFR MASPAVKD+D+++FAGKL
Sbjct: 394 EVFETKVALQLGRSTSELKQFRRMASPAVKDDDVKDFAGKLF 435
>Os12g0110700
Length = 324
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 79/85 (92%), Positives = 85/85 (100%)
Query: 359 VNTVEHGGQVGMVFELCRNVAGIYRKIQEDIEANLEEADVERRENGEVFETKVALQLGRS 418
VNTVEHGGQVGMVF+LCRNVAGIYRKIQEDI+ANL+EADVERRENGEVFETKVALQLGRS
Sbjct: 103 VNTVEHGGQVGMVFKLCRNVAGIYRKIQEDIKANLKEADVERRENGEVFETKVALQLGRS 162
Query: 419 TSELRQFRAMASPAVKDEDIREFAG 443
TSEL+QFRA+ASPAVKDEDI+EFAG
Sbjct: 163 TSELKQFRAIASPAVKDEDIKEFAG 187
>Os05g0136601
Length = 316
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 67/87 (77%), Gaps = 19/87 (21%)
Query: 359 VNTVEHGGQVGMVFELCRNVAGIYRKIQEDIEANLEEADVERRENGEVFETKVALQLGRS 418
VNTVEHGGQ EDIEANL+EADVERRENGEVFETKVALQLGRS
Sbjct: 61 VNTVEHGGQ-------------------EDIEANLKEADVERRENGEVFETKVALQLGRS 101
Query: 419 TSELRQFRAMASPAVKDEDIREFAGKL 445
TSEL+QFRA+ASPAVKDEDI+EFAG L
Sbjct: 102 TSELKQFRAIASPAVKDEDIKEFAGAL 128
>Os02g0487400
Length = 199
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 49/52 (94%)
Query: 393 LEEADVERRENGEVFETKVALQLGRSTSELRQFRAMASPAVKDEDIREFAGK 444
L+EADVE+REN +VFETKVALQLGRST EL++F+A+ASP VKDEDI+EFAG+
Sbjct: 94 LKEADVEQRENCKVFETKVALQLGRSTLELKKFKAIASPTVKDEDIKEFAGR 145
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/42 (90%), Positives = 41/42 (97%)
Query: 275 MAGNGWTQELEEEMRGILRVIKAKDENEYVSVGKLVLAVNKR 316
MAGNGWTQE+EEEMR ILRVI+AKDENEYVSVGKLVLA+NKR
Sbjct: 1 MAGNGWTQEVEEEMRDILRVIRAKDENEYVSVGKLVLALNKR 42
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,906,203
Number of extensions: 278895
Number of successful extensions: 764
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 756
Number of HSP's successfully gapped: 11
Length of query: 446
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 342
Effective length of database: 11,605,545
Effective search space: 3969096390
Effective search space used: 3969096390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)