BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0223700 Os02g0223700|J013106E03
         (232 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0223700  Conserved hypothetical protein                      311   3e-85
Os06g0564000  Conserved hypothetical protein                       69   3e-12

>Os02g0223700 Conserved hypothetical protein
          Length = 232

 Score =  311 bits (797), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 166/232 (71%), Positives = 166/232 (71%)

Query: 1   MPMERSVSCAERPPXXXXXXXXXDLRCYSASYATSYKPXXXXXXXXXXXXXTNTTTKVMK 60
           MPMERSVSCAERPP         DLRCYSASYATSYKP             TNTTTKVMK
Sbjct: 1   MPMERSVSCAERPPAAFGGGAAADLRCYSASYATSYKPGAGAAAGAAAGAGTNTTTKVMK 60

Query: 61  RATSANAWSRPXXXXXVQRSGSTKTVASSAAXXXXXXXXXXXXFNLRXXXXXXXXXXXPF 120
           RATSANAWSRP     VQRSGSTKTVASSAA            FNLR           PF
Sbjct: 61  RATSANAWSRPGGGGGVQRSGSTKTVASSAAGWGRGGGGPTPGFNLRSYSASYAASYSPF 120

Query: 121 EDPSPAEKXXXXXXXXXXXXXXXXRRSVNLRGYTPSFAALDDTAVAPPIPAKKQVSPTGS 180
           EDPSPAEK                RRSVNLRGYTPSFAALDDTAVAPPIPAKKQVSPTGS
Sbjct: 121 EDPSPAEKTGGGGGGAATWASSAGRRSVNLRGYTPSFAALDDTAVAPPIPAKKQVSPTGS 180

Query: 181 FAGAVVDDAELQRRKRLVAYKAYDVEGKVKDSVRRSVKWIKGKCSRAVDGKW 232
           FAGAVVDDAELQRRKRLVAYKAYDVEGKVKDSVRRSVKWIKGKCSRAVDGKW
Sbjct: 181 FAGAVVDDAELQRRKRLVAYKAYDVEGKVKDSVRRSVKWIKGKCSRAVDGKW 232



>Os06g0564000 Conserved hypothetical protein
          Length = 134

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%)

Query: 179 GSFAGAVVDDAELQRRKRLVAYKAYDVEGKVKDSVRRSVKWIKGKCSRAVDGKW 232
           G   G + D AE+QRR+R+  Y+ Y VEGKVK S++ S++WIKGKC+R VDG W
Sbjct: 81  GRVWGGLGDAAEMQRRRRVAGYRVYGVEGKVKVSLQSSMRWIKGKCTRVVDGWW 134



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.125    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,589,239
Number of extensions: 172439
Number of successful extensions: 436
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 3
Length of query: 232
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 134
Effective length of database: 11,918,829
Effective search space: 1597123086
Effective search space used: 1597123086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)