BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0221800 Os02g0221800|Os02g0221800
(383 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0221800 EF-Hand type domain containing protein 625 e-179
Os01g0572700 Calcium-binding EF-hand domain containing protein 225 4e-59
Os04g0681500 EF-Hand type domain containing protein 151 9e-37
>Os02g0221800 EF-Hand type domain containing protein
Length = 383
Score = 625 bits (1613), Expect = e-179, Method: Compositional matrix adjust.
Identities = 306/322 (95%), Positives = 306/322 (95%)
Query: 62 PRGQIPFDPVIAGXXXXXXXXXXXXXXXXGLHAPGFEAAPVPEDYIDGGGGFGADPDEDY 121
PRGQIPFDPVIAG GLHAPGFEAAPVPEDYIDGGGGFGADPDEDY
Sbjct: 62 PRGQIPFDPVIAGLERRRDDREWERLAAAGLHAPGFEAAPVPEDYIDGGGGFGADPDEDY 121
Query: 122 INDAARFNLTRRVEALFPKIDVDPADGAVTPAELTAWNLASARREVMHRTARELDLHDRD 181
INDAARFNLTRRVEALFPKIDVDPADGAVTPAELTAWNLASARREVMHRTARELDLHDRD
Sbjct: 122 INDAARFNLTRRVEALFPKIDVDPADGAVTPAELTAWNLASARREVMHRTARELDLHDRD 181
Query: 182 HDGRIAFSEYERPSWAWRFDDHNSSNDGVGWWKEEHFNASDMDGDGFLNLIEFNDFLHPA 241
HDGRIAFSEYERPSWAWRFDDHNSSNDGVGWWKEEHFNASDMDGDGFLNLIEFNDFLHPA
Sbjct: 182 HDGRIAFSEYERPSWAWRFDDHNSSNDGVGWWKEEHFNASDMDGDGFLNLIEFNDFLHPA 241
Query: 242 DTTNPKLINWLCKEEVRERDKDNDGKLNFQEFYNGLFYSIRHFDEEASTDDSNASDAPAR 301
DTTNPKLINWLCKEEVRERDKDNDGKLNFQEFYNGLFYSIRHFDEEASTDDSNASDAPAR
Sbjct: 242 DTTNPKLINWLCKEEVRERDKDNDGKLNFQEFYNGLFYSIRHFDEEASTDDSNASDAPAR 301
Query: 302 KSFTHLDLDNDGLLSADELKPIIGNLHPPEHFYAKQQADYVITQADTNKDGQLSLQEMIE 361
KSFTHLDLDNDGLLSADELKPIIGNLHPPEHFYAKQQADYVITQADTNKDGQLSLQEMIE
Sbjct: 302 KSFTHLDLDNDGLLSADELKPIIGNLHPPEHFYAKQQADYVITQADTNKDGQLSLQEMIE 361
Query: 362 NPYVFYSALFTEDDYGFHDELR 383
NPYVFYSALFTEDDYGFHDELR
Sbjct: 362 NPYVFYSALFTEDDYGFHDELR 383
>Os01g0572700 Calcium-binding EF-hand domain containing protein
Length = 244
Score = 225 bits (574), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 112/235 (47%), Positives = 161/235 (68%), Gaps = 14/235 (5%)
Query: 155 LTAWNLASARREVMHRTARELDLHDRDHDGRIAFSEYERPSWAWRFDDHNSSND-----G 209
LT WNL +R + +HR+ARE++L+D++ DG +++ ++ HN S+ G
Sbjct: 18 LTRWNLEQSRADQLHRSAREMELYDKNGDGVVSYGDFRAQ--------HNESSGEVNSLG 69
Query: 210 VGWWKEEHFNASDMDGDGFLNLIEFNDFLHPADTTNPKLINWLCKEEVRERDKDNDGKLN 269
WWKEEHFNASD DG GFLN EFNDFL+P+D+ NP++IN LCK+E+R+RDKD DGKLN
Sbjct: 70 FPWWKEEHFNASDADGHGFLNKTEFNDFLNPSDSENPQIINLLCKQEIRQRDKDGDGKLN 129
Query: 270 FQEFYNGLFYSIRHFDEEASTDDSNASDAPARKSFTHLDLDNDGLLSADELKPIIGNLHP 329
F+E+++GL I +D E + ++ A++ F+ LD D+DG +S EL+P++ LH
Sbjct: 130 FEEYFHGLHDHIHGYDYENADISHIGNNTVAKERFSKLDKDSDGFISEHELEPVLDKLHL 189
Query: 330 PEHFYAKQQADYVITQADTNKDGQLSLQEMIENPYVFYSALFTEDDYG-FHDELR 383
E +YA+QQA + I++AD + DG+L+L EMIENPY FY ++F DD FHDE R
Sbjct: 190 SERYYARQQAAHAISEADKDHDGRLTLDEMIENPYAFYGSVFLSDDEDYFHDEFR 244
>Os04g0681500 EF-Hand type domain containing protein
Length = 364
Score = 151 bits (381), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 100/274 (36%), Positives = 143/274 (52%), Gaps = 10/274 (3%)
Query: 117 PDEDYINDAARFNLTRRVEALFPKIDVDPADGAVTPAELTAWNLASARREVMHRTARELD 176
P E Y N+ R+ LFP +D P DG V+ EL AW A + REL
Sbjct: 94 PLERYFGSDGELNVKERLLYLFPMLDRAPKDGGVSCGELEAWLRRQAADRLDAVARRELK 153
Query: 177 LHDRDHDGRIAFSEYERPSWAWRFDDHNSSNDGVGWWKEEHFNASDMDGDGFLNLIEFND 236
HD+D DG + EY D ++ + GWW + F ++D D G ++ IE ND
Sbjct: 154 RHDKDGDGVVTLREYLAVDHDQHIDWTDTEHGEPGWWLHK-FISADRDHSGAMDFIELND 212
Query: 237 FLHPADTTNPKLINWLCKEEVRERDKDNDGKLNFQEFYNGLFYSIRHFDEEASTDDSNAS 296
FLHP D++ K+ WL K+++ D D DGKL+ EF + F+ I H + D + S
Sbjct: 213 FLHPEDSSQEKVKLWLLKDKLSGMDHDRDGKLSLDEFISQ-FHMIDHNSIVEHSADDDTS 271
Query: 297 DAPARKSFTHLDLDNDGLLSADELKPIIGNLHPPEHFYAKQQADYVITQADTNKDGQLSL 356
A A K F LD +NDG L+ +E +P+I +L E YAK A ++ +AD NKD +LSL
Sbjct: 272 CAEAEKKFRELDSNNDGYLTVEEARPVIQSLISGEFSYAKSHAK-LLMKADDNKDNKLSL 330
Query: 357 QEMIENPYVFYSALFTEDDY-------GFHDELR 383
+EM+ + FY+ ++ +D Y HDELR
Sbjct: 331 EEMLNHYLSFYNIVYMDDHYDYDDIGNNIHDELR 364
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,863,077
Number of extensions: 605842
Number of successful extensions: 1935
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1938
Number of HSP's successfully gapped: 3
Length of query: 383
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 280
Effective length of database: 11,657,759
Effective search space: 3264172520
Effective search space used: 3264172520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)