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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0681500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EF-Hand type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.44 (0.0271) R2 : 0.00108
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.04 (0.0571) R2dN8 : 0.00139 R2N8 : 0.00108
σ : 0.511
deviance : 119.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
113 0.499 3.33 1.02 0.264 -0.775 -0.404 5.58 -0.0257 5.12 29.3 1500 -- --
114.86 0.499 3.43 0.0709 0.287 -0.185 -0.294 -- 0.00356 4.57 25.18 2692 -- --
113.36 0.496 3.33 1.01 0.259 -0.775 -- 5.53 -0.0241 4.69 29.28 1500 -- --
114.75 0.499 3.43 0.0482 0.283 -0.188 -- -- -0.00538 4.61 21.67 2610 -- --
116.3 0.502 3.32 1.05 -- -0.887 -- 6.32 0.0449 -- 28.68 1800 -- --
115.54 0.504 3.44 -0.0223 0.269 -- -0.426 -- -0.0501 5.31 -- -- -- --
115.95 0.504 3.44 -0.0236 0.266 -- -- -- -0.0484 4.92 -- -- -- --
117.97 0.508 3.43 0.0364 -- -0.265 -- -- 9.97e-05 -- 21.38 3248 -- --
114.8 0.499 3.43 -- 0.286 -0.178 -- -- -0.0132 4.61 21.93 2609 -- --
119.69 0.511 3.44 -0.0138 -- -- -- -- -0.0415 -- -- -- -- --
115.96 0.504 3.44 -- 0.266 -- -- -- -0.0458 4.92 -- -- -- --
118 0.508 3.44 -- -- -0.259 -- -- -0.00466 -- 21.27 3254 -- --
119.69 0.511 3.44 -- -- -- -- -- -0.04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.29 temperature 20.0 10 > th dose dependent rect. 2 1
2 103.31 atmosphere 1015.0 30 < th dose dependent rect. 2 1
4 103.41 humidity 90.0 30 > th dose independent rect. 2 1
8 103.43 humidity 80.0 30 > th dose dependent rect. 2 1
9 103.44 wind 3.0 30 < th dose independent rect. 2 1
10 103.44 wind 5.0 30 < th dose dependent rect. 2 1
17 103.45 humidity 50.0 30 > th dose dependent rect. 2 1
21 103.46 temperature 10.0 30 > th dose independent rect. 2 1
23 103.46 temperature 30.0 30 < th dose independent rect. 2 1
24 103.46 humidity 50.0 30 > th dose independent rect. 2 1
27 103.46 atmosphere 995.0 30 > th dose independent rect. 2 1
28 103.46 atmosphere 1010.0 30 < th dose independent rect. 2 1
30 103.46 radiation 1.0 30 < th dose independent rect. 2 1
35 103.46 precipitation 0.1 30 < th dose independent rect. 2 1
36 103.46 temperature 10.0 30 > th dose independent rect. 3 23
37 103.46 radiation 1.0 30 < th dose dependent rect. 2 1
42 103.46 precipitation 0.1 30 < th dose dependent rect. 2 1
48 103.54 atmosphere 1005.0 30 > th dose dependent rect. 2 1
55 103.59 atmosphere 995.0 30 > th dose dependent rect. 2 1
57 103.63 temperature 30.0 30 < th dose dependent rect. 2 1
59 103.64 atmosphere 1005.0 30 > th dose independent rect. 2 1
63 103.71 wind 1.0 30 > th dose independent rect. 2 1
96 103.90 wind 9.0 30 < th dose independent rect. 3 23
107 104.97 radiation 10.0 30 > th dose independent rect. 7 1
108 105.12 humidity 80.0 10 < th dose independent rect. 6 2
127 105.62 atmosphere 995.0 30 > th dose independent rect. 3 23
130 105.86 humidity 80.0 10 < th dose independent rect. 2 6
132 105.87 humidity 80.0 10 < th dose independent rect. 24 8
141 106.67 precipitation 0.1 30 < th dose independent rect. 3 23
142 106.67 precipitation 0.1 30 < th dose dependent rect. 3 23
155 107.62 radiation 10.0 30 < th dose dependent rect. 3 23
161 107.73 temperature 25.0 30 > th dose independent rect. 7 1
176 107.77 wind 5.0 10 < th dose independent rect. 7 1
179 107.87 humidity 50.0 30 > th dose independent rect. 3 23
181 107.98 radiation 1.0 43200 < th dose dependent rect. 3 1
184 108.13 wind 7.0 10 < th dose dependent rect. 7 1
186 108.21 radiation 10.0 30 < th dose independent rect. 3 23
187 108.24 wind 1.0 30 > th dose independent rect. 7 1
191 108.27 atmosphere 995.0 10 > th dose independent rect. 8 23
197 108.47 wind 9.0 4320 < th dose independent rect. 3 1
199 108.51 wind 1.0 30 < th dose independent rect. 24 3
201 108.57 temperature 25.0 90 < th dose independent rect. 6 1
211 108.66 temperature 10.0 1440 > th dose independent rect. 3 1
214 108.66 temperature 30.0 1440 < th dose independent rect. 3 1
218 108.66 humidity 50.0 1440 > th dose independent rect. 3 1
227 108.66 atmosphere 995.0 1440 > th dose independent rect. 3 1
228 108.66 radiation 1.0 1440 < th dose independent rect. 3 1
248 108.66 temperature 10.0 1440 > th dose independent rect. 4 23
251 108.66 radiation 1.0 1440 < th dose dependent rect. 3 1
266 108.72 humidity 50.0 30 > th dose independent rect. 8 23
270 108.75 radiation 20.0 10 < th dose independent rect. 7 1
272 108.77 radiation 40.0 30 < th dose independent rect. 7 1
276 108.80 precipitation 0.1 10 < th dose independent rect. 7 1
278 108.80 wind 1.0 10 > th dose independent rect. 8 23
279 108.80 precipitation 0.1 10 < th dose dependent rect. 7 1
284 108.81 temperature 10.0 10 > th dose independent rect. 7 1
288 108.81 temperature 30.0 10 < th dose independent rect. 7 1
290 108.81 humidity 50.0 10 > th dose independent rect. 7 1
294 108.81 atmosphere 995.0 10 > th dose independent rect. 7 1
296 108.81 atmosphere 1015.0 10 < th dose independent rect. 7 1
298 108.81 temperature 10.0 10 > th dose independent rect. 8 23
300 108.83 wind 9.0 1440 < th dose independent rect. 8 1
303 108.83 temperature 10.0 1440 > th dose independent rect. 8 1
308 108.83 humidity 50.0 1440 > th dose independent rect. 8 1
310 108.83 atmosphere 995.0 1440 > th dose independent rect. 8 1
313 108.83 atmosphere 1015.0 1440 < th dose independent rect. 8 1
315 108.83 temperature 10.0 1440 > th dose independent rect. 9 23
323 108.97 precipitation 0.1 1440 < th dose independent rect. 8 1
324 108.97 precipitation 0.1 30 < th dose independent rect. 8 23
325 108.97 precipitation 0.1 1440 < th dose dependent rect. 8 1
326 108.97 precipitation 0.1 30 < th dose dependent rect. 8 23
335 109.07 wind 9.0 30 < th dose independent rect. 8 23
336 109.13 temperature 10.0 10 > th dose dependent rect. 7 1
342 109.20 atmosphere 995.0 30 > th dose dependent rect. 7 1
345 109.23 temperature 30.0 30 < th dose dependent rect. 7 1
349 109.28 atmosphere 1015.0 30 < th dose dependent rect. 7 1
373 109.86 wind 9.0 720 < th dose independent rect. 19 8
383 109.98 wind 9.0 720 < th dose independent rect. 15 16
385 109.99 humidity 90.0 90 < th dose independent rect. 2 1
386 109.99 radiation 1.0 10 > th dose dependent rect. 7 1
394 110.11 atmosphere 1015.0 30 < th dose independent rect. 3 23
398 110.13 wind 1.0 10 < th dose independent rect. 11 16
410 110.20 radiation 40.0 30 < th dose dependent rect. 7 1
414 110.24 atmosphere 995.0 720 > th dose independent rect. 7 8
416 110.25 humidity 50.0 30 > th dose dependent rect. 7 1
422 110.30 wind 1.0 10 < th dose independent rect. 17 10
433 110.36 wind 1.0 10 < th dose independent rect. 6 21
445 110.43 temperature 10.0 720 > th dose independent rect. 7 8
446 110.43 atmosphere 1015.0 720 < th dose independent rect. 7 8
447 110.43 temperature 10.0 720 > th dose independent rect. 15 16
448 110.44 temperature 10.0 720 > th dose independent rect. 19 8
449 110.44 temperature 30.0 720 < th dose independent rect. 19 8
450 110.44 humidity 50.0 720 > th dose independent rect. 19 8
451 110.44 atmosphere 995.0 720 > th dose independent rect. 19 8
452 110.44 radiation 1.0 720 < th dose independent rect. 19 8
457 110.44 temperature 10.0 720 > th dose independent rect. 3 16
459 110.44 radiation 1.0 720 < th dose dependent rect. 19 8
480 110.52 precipitation 0.1 720 < th dose independent rect. 19 8
481 110.52 wind 1.0 10 < th dose independent rect. 8 19
483 110.52 precipitation 0.1 720 < th dose dependent rect. 19 8
484 110.53 temperature 10.0 30 > th dose dependent rect. 3 23
491 110.58 wind 7.0 14400 > th dose independent rect. 9 1
498 110.64 wind 5.0 14400 > th dose dependent rect. 9 1
513 110.67 wind 3.0 14400 > th dose dependent rect. 9 3
519 110.68 precipitation 0.1 720 < th dose independent rect. 15 16
524 110.68 precipitation 0.1 720 < th dose dependent rect. 15 16
535 110.73 humidity 90.0 10 < th dose dependent rect. 7 1
537 110.74 wind 5.0 14400 < th dose independent rect. 9 3
544 110.76 precipitation 0.1 720 < th dose independent rect. 7 8
546 110.76 precipitation 0.1 720 < th dose dependent rect. 7 8
547 110.77 humidity 70.0 720 > th dose dependent rect. 3 1
567 110.86 atmosphere 995.0 720 > th dose independent rect. 23 16
573 110.88 wind 9.0 1440 < th dose independent rect. 12 2
575 110.88 wind 5.0 14400 > th dose independent rect. 9 3
578 110.88 wind 5.0 90 < th dose independent rect. 19 13
587 110.89 radiation 1.0 90 > th dose independent rect. 8 22
589 110.90 atmosphere 995.0 720 > th dose independent rect. 3 16
595 110.92 temperature 25.0 720 < th dose independent rect. 6 1
596 110.92 humidity 80.0 720 > th dose independent rect. 20 1
616 110.99 atmosphere 1015.0 720 < th dose independent rect. 3 16
618 111.00 wind 1.0 30 > th dose dependent rect. 2 1
624 111.02 radiation 40.0 720 < th dose independent rect. 15 16
636 111.05 humidity 50.0 30 > th dose dependent rect. 3 23
670 111.07 precipitation 0.1 14400 > th dose independent rect. 24 9
671 111.07 atmosphere 995.0 720 > th dose independent rect. 15 16
683 111.08 precipitation 0.1 14400 < th dose independent rect. 24 11
687 111.08 precipitation 0.1 14400 < th dose dependent rect. 24 11
688 111.09 precipitation 0.1 14400 < th dose independent rect. 24 9
690 111.09 precipitation 0.1 14400 < th dose dependent rect. 24 9
692 111.10 precipitation 0.1 14400 > th dose independent rect. 24 11
697 111.11 temperature 10.0 720 > th dose independent rect. 15 8
699 111.11 temperature 10.0 720 > th dose independent rect. 23 16
708 111.13 wind 7.0 14400 < th dose dependent rect. 10 2
734 111.19 wind 7.0 1440 > th dose dependent rect. 12 1
737 111.19 precipitation 0.1 14400 > th dose dependent rect. 24 9
738 111.19 wind 9.0 30 < th dose dependent rect. 19 13
739 111.19 wind 1.0 30 < th dose dependent rect. 11 16
744 111.20 atmosphere 1015.0 30 < th dose independent rect. 8 23
762 111.23 temperature 10.0 720 > th dose dependent rect. 3 1
767 111.25 precipitation 0.1 720 < th dose independent rect. 15 8
772 111.25 precipitation 0.1 720 < th dose dependent rect. 15 8
782 111.27 wind 9.0 1440 > th dose independent rect. 12 2
784 111.27 temperature 10.0 720 > th dose independent rect. 3 8
785 111.27 atmosphere 995.0 720 > th dose independent rect. 3 8
787 111.27 temperature 10.0 720 > th dose independent rect. 11 16
797 111.28 radiation 10.0 30 < th dose independent rect. 21 23
805 111.29 wind 1.0 30 < th dose dependent rect. 17 10
807 111.29 temperature 10.0 30 > th dose dependent rect. 8 23
809 111.30 humidity 50.0 720 > th dose independent rect. 3 8
824 111.32 wind 9.0 720 < th dose independent rect. 15 8
834 111.33 humidity 90.0 90 < th dose dependent rect. 2 6
838 111.34 atmosphere 1000.0 90 > th dose independent rect. 8 11
845 111.36 temperature 30.0 30 < th dose independent rect. 8 23
858 111.38 wind 7.0 720 < th dose independent rect. 20 1
876 111.42 humidity 90.0 720 > th dose independent rect. 3 1
906 111.48 wind 9.0 1440 < th dose independent rect. 12 4
907 111.48 wind 1.0 90 > th dose independent rect. 8 11
922 111.49 temperature 20.0 90 > th dose independent rect. 3 3
926 111.49 radiation 1.0 10 > th dose dependent rect. 17 15
934 111.51 wind 9.0 720 < th dose independent rect. 15 1
939 111.52 wind 1.0 10 > th dose independent rect. 21 10
957 111.53 radiation 10.0 10 < th dose dependent rect. 21 23
963 111.54 radiation 40.0 90 < th dose independent rect. 13 14
968 111.55 radiation 10.0 10 > th dose independent sin 11 NA
981 111.56 wind 9.0 720 < th dose independent rect. 3 8
997 111.59 humidity 70.0 4320 > th dose independent rect. 21 1