Os02g0221800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EF-Hand type domain containing protein.
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Os02g0221800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EF-Hand type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.48 | 0.334 | 7.14 | -1.44 | 1.02 | 0.795 | -0.223 | -0.957 | -0.26 | 3.54 | 16.5 | 99 | -- | -- |
| 51.01 | 0.333 | 7.13 | -1.29 | 1.03 | 0.844 | 0.0434 | -- | -0.219 | 3.53 | 14.79 | 98 | -- | -- |
| 50.58 | 0.331 | 7.14 | -1.4 | 1.02 | 0.827 | -- | -0.738 | -0.251 | 3.53 | 15.76 | 99 | -- | -- |
| 51.01 | 0.333 | 7.13 | -1.29 | 1.02 | 0.841 | -- | -- | -0.219 | 3.53 | 14.8 | 99 | -- | -- |
| 78.8 | 0.413 | 7.15 | -1.48 | -- | 0.795 | -- | -0.543 | -0.274 | -- | 16.97 | 1175 | -- | -- |
| 58.24 | 0.358 | 7.1 | -1.12 | 0.782 | -- | -0.113 | -- | -0.0985 | 3.65 | -- | -- | -- | -- |
| 58.27 | 0.357 | 7.1 | -1.12 | 0.781 | -- | -- | -- | -0.0979 | 3.63 | -- | -- | -- | -- |
| 79.04 | 0.414 | 7.13 | -1.35 | -- | 0.859 | -- | -- | -0.227 | -- | 12.02 | 1170 | -- | -- |
| 90.45 | 0.445 | 7.08 | -- | 0.83 | 0.226 | -- | -- | -0.0047 | 3.52 | 17.6 | 12 | -- | -- |
| 92.14 | 0.449 | 7.1 | -1.08 | -- | -- | -- | -- | -0.0771 | -- | -- | -- | -- | -- |
| 91.16 | 0.447 | 7.07 | -- | 0.759 | -- | -- | -- | 0.0265 | 3.64 | -- | -- | -- | -- |
| 114.68 | 0.499 | 7.06 | -- | -- | -0.586 | -- | -- | 0.093 | -- | 24.2 | 35 | -- | -- |
| 123.16 | 0.518 | 7.07 | -- | -- | -- | -- | -- | 0.0432 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.55 | temperature | 10 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 15 | 48.93 | radiation | 20 | 720 | > th | dose independent | rect. | 16 | 1 |
| 29 | 49.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 20 |
| 37 | 49.17 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 38 | 49.19 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 46 | 49.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 47 | 49.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 66 | 49.35 | radiation | 10 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 83 | 49.40 | temperature | 20 | 30 | > th | dose independent | rect. | 23 | 23 |
| 89 | 49.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 98 | 49.45 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 8 |
| 109 | 49.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 9 |
| 160 | 49.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 173 | 49.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 243 | 49.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 272 | 49.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 274 | 49.72 | radiation | 10 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 308 | 49.79 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 353 | 49.84 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 354 | 49.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 360 | 49.86 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 364 | 49.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 374 | 49.86 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 394 | 49.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 4 |
| 429 | 49.92 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 438 | 49.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 446 | 49.95 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 488 | 49.99 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 491 | 49.99 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 501 | 50.01 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 14 |
| 503 | 50.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 519 | 50.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 520 | 50.03 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 521 | 50.03 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 4 |
| 522 | 50.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 7 |
| 540 | 50.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 541 | 50.04 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 570 | 50.06 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 572 | 50.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 596 | 50.08 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 11 |
| 654 | 50.14 | wind | 1 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 670 | 50.15 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 705 | 50.18 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 715 | 50.19 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 783 | 50.24 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 786 | 50.24 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 806 | 50.25 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 832 | 50.27 | wind | 7 | 1440 | < th | dose dependent | rect. | 2 | 1 |