BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0217800 Os02g0217800|Os02g0217800
(501 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0217800 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/... 807 0.0
Os09g0477900 NusB/RsmB/TIM44 domain containing protein 74 4e-13
Os09g0551300 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/... 69 7e-12
>Os02g0217800 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain
containing protein
Length = 501
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/501 (81%), Positives = 408/501 (81%)
Query: 1 MPPPPPSKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRR 60
MPPPPPSKN SRR
Sbjct: 1 MPPPPPSKNRGHVPAPRPPPGKPPGRRMASRDAAERAAFFARREAAAVLRRVLRGDASRR 60
Query: 61 AAGSIKSLVYSPSVRNKRATFALVCQTLKYLPILKEVLASTGVLTSKWKKQEELVFVTAY 120
AAGSIKSLVYSPSVRNKRATFALVCQTLKYLPILKEVLASTGVLTSKWKKQEELVFVTAY
Sbjct: 61 AAGSIKSLVYSPSVRNKRATFALVCQTLKYLPILKEVLASTGVLTSKWKKQEELVFVTAY 120
Query: 121 DILFGQETAASGSVEQLIMLHKDTIMAALEKMCIRRKVRSVEDLVSKKRTVKPKPRFLRV 180
DILFGQETAASGSVEQLIMLHKDTIMAALEKMCIRRKVRSVEDLVSKKRTVKPKPRFLRV
Sbjct: 121 DILFGQETAASGSVEQLIMLHKDTIMAALEKMCIRRKVRSVEDLVSKKRTVKPKPRFLRV 180
Query: 181 NTLRTSTDSVIEELNKIHXXXXXXXXXXXXXXXXGTDLHNHHLVSEGKGKASCMVAVALC 240
NTLRTSTDSVIEELNKIH GTDLHNHHLVSEGKGKASCMVAVALC
Sbjct: 181 NTLRTSTDSVIEELNKIHKVDKDELVPDLLVLPPGTDLHNHHLVSEGKGKASCMVAVALC 240
Query: 241 PEPGWKVIDACAAPGNKTVHLAALMNGEGSITACELNKERTKTLQNTIRRSGANNIETIN 300
PEPGWKVIDACAAPGNKTVHLAALMNGEGSITACELNKERTKTLQNTIRRSGANNIETIN
Sbjct: 241 PEPGWKVIDACAAPGNKTVHLAALMNGEGSITACELNKERTKTLQNTIRRSGANNIETIN 300
Query: 301 GDFLDIDSNDPSYAEVRAILLDPSCSGSGISTERLDHLLPSHSRGNQDDASTSSRIRKLS 360
GDFLDIDSNDPSYAEVRAILLDPSCSGSGISTERLDHLLPSHSRGNQDDASTSSRIRKLS
Sbjct: 301 GDFLDIDSNDPSYAEVRAILLDPSCSGSGISTERLDHLLPSHSRGNQDDASTSSRIRKLS 360
Query: 361 AFQRKALSHALSFPSVERVVYSTCSIHQAENEDXXXXXXXXXXXXGFELATPFPQWRRRG 420
AFQRKALSHALSFPSVERVVYSTCSIHQAENED GFELATPFPQWRRRG
Sbjct: 361 AFQRKALSHALSFPSVERVVYSTCSIHQAENEDVVSSVLPLASSLGFELATPFPQWRRRG 420
Query: 421 LPVFEGSEHLLRTDPEDGLEGFFISLFVRKXXXXXXXVKPSNGGLGVSKQVFKRRNGLMA 480
LPVFEGSEHLLRTDPEDGLEGFFISLFVRK VKPSNGGLGVSKQVFKRRNGLMA
Sbjct: 421 LPVFEGSEHLLRTDPEDGLEGFFISLFVRKAAAAADAVKPSNGGLGVSKQVFKRRNGLMA 480
Query: 481 FGXXXXXXXXXXCSTRGLSRR 501
FG CSTRGLSRR
Sbjct: 481 FGSSRLSRMMMLCSTRGLSRR 501
>Os09g0477900 NusB/RsmB/TIM44 domain containing protein
Length = 570
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 28/181 (15%)
Query: 223 LVSEG----KGKASCMVAVALCPEPGWKVIDACAAPGNKTVHLAALMNGEGSITACELNK 278
L+ EG + +++ +V + P+PG +ID CAAPG KT+ +AA ++G+G I A ++NK
Sbjct: 352 LLKEGMCAVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLFMAARLSGQGKIWALDINK 411
Query: 279 ERTKTLQNTIRRSGANNIETINGDFLDIDSNDPSYAE-----VRAILLDPSCSGSGISTE 333
R + L A + ++ DI ++ YA+ +LLD CSG G+ ++
Sbjct: 412 GRLRILME------AAKLHNLDAMISDIHADLRLYAKETTATFDKVLLDAPCSGLGVLSK 465
Query: 334 RLDHLLPSHSRGNQDDASTSSRIRKLSAFQRKALSHA--LSFPSVERVVYSTCSIHQAEN 391
R D +R +D + +L Q + L A L P +VYSTCSI EN
Sbjct: 466 RADL---RWNRQFED-------LEELMCLQDELLDSASMLVKPG-GILVYSTCSIDPEEN 514
Query: 392 E 392
E
Sbjct: 515 E 515
>Os09g0551300 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain
containing protein
Length = 699
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
Query: 228 KGKASCMVAVALCPEPGWKVIDACAAPGNKTVHLAALMNGEGSITACELNKERTKTLQNT 287
+G +S + +AL P+ +++D AAPG KT ++ ALM G I A E N++R L
Sbjct: 326 QGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIGALMKNTGIIYANEFNEKRLHGLLGN 385
Query: 288 IRRSGANNIETINGD------FLDIDSNDPSYAEVRAILLDPSCSGSGISTERLDHLLPS 341
I R G N N D L ++S V +LLD C+G+G T D + +
Sbjct: 386 IHRMGVTNTIVCNYDGKELPKVLGMNS-------VDRVLLDAPCTGTG--TIWKDPQIKT 436
Query: 342 HSRGNQDDASTSSRIRKLSAFQRKALSHALSFPSVER-----VVYSTCSIHQAENE 392
S+G +D IR + Q++ L A+ +VYSTCS+ ENE
Sbjct: 437 -SKGIED-------IRDCAFVQKQLLLAAIDLVDANSKTGGYIVYSTCSLMIPENE 484
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,407,917
Number of extensions: 541115
Number of successful extensions: 1180
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1176
Number of HSP's successfully gapped: 3
Length of query: 501
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 396
Effective length of database: 11,553,331
Effective search space: 4575119076
Effective search space used: 4575119076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)