Os02g0217800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0217800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.42 | 0.334 | 9.09 | -1.29 | 0.587 | 0.542 | 0.41 | -0.774 | -0.052 | 17.9 | 21.78 | 2577 | -- | -- |
| 51.43 | 0.334 | 9.06 | -1.08 | 0.583 | 0.615 | 0.383 | -- | 0.0082 | 17.9 | 21.39 | 2529 | -- | -- |
| 50.8 | 0.332 | 9.09 | -1.28 | 0.589 | 0.548 | -- | -0.734 | -0.0466 | 17.8 | 21.8 | 2507 | -- | -- |
| 51.78 | 0.335 | 9.06 | -1.09 | 0.587 | 0.633 | -- | -- | 0.00631 | 17.7 | 21.37 | 2512 | -- | -- |
| 67.81 | 0.384 | 9.07 | -1.25 | -- | 0.563 | -- | -0.624 | -0.0475 | -- | 21.8 | 2105 | -- | -- |
| 61.83 | 0.369 | 9.02 | -0.77 | 0.572 | -- | 0.521 | -- | 0.194 | 18.2 | -- | -- | -- | -- |
| 62.46 | 0.37 | 9.02 | -0.775 | 0.576 | -- | -- | -- | 0.196 | 18.1 | -- | -- | -- | -- |
| 68.67 | 0.386 | 9.05 | -1.07 | -- | 0.601 | -- | -- | -0.00412 | -- | 21.61 | 2088 | -- | -- |
| 73.56 | 0.399 | 9.03 | -- | 0.566 | 0.338 | -- | -- | 0.16 | 17.2 | 22.36 | 890 | -- | -- |
| 79.64 | 0.417 | 9.01 | -0.791 | -- | -- | -- | -- | 0.183 | -- | -- | -- | -- | -- |
| 78.27 | 0.414 | 9 | -- | 0.587 | -- | -- | -- | 0.283 | 18 | -- | -- | -- | -- |
| 89.91 | 0.442 | 9.01 | -- | -- | 0.346 | -- | -- | 0.16 | -- | 22.2 | 694 | -- | -- |
| 96.15 | 0.458 | 8.99 | -- | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.62 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 2 | 48.68 | temperature | 20.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 6 | 48.82 | temperature | 20.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 8 | 48.91 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 13 |
| 15 | 49.03 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 23 | 49.16 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 33 | 49.24 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 34 | 49.24 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 70 | 49.43 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 72 | 49.46 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 75 | 49.47 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 78 | 49.48 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 90 | 49.54 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 95 | 49.55 | temperature | 30.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 122 | 49.64 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 128 | 49.64 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 139 | 49.69 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 143 | 49.71 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 149 | 49.73 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 153 | 49.74 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 154 | 49.74 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 157 | 49.74 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 158 | 49.74 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 162 | 49.76 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 169 | 49.77 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 177 | 49.81 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 194 | 49.87 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 203 | 49.91 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 205 | 49.92 | temperature | 25.0 | 270 | > th | dose independent | sin | 2 | NA |
| 259 | 50.06 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 282 | 50.14 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 283 | 50.14 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 291 | 50.16 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 302 | 50.18 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 319 | 50.18 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 372 | 50.29 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 380 | 50.30 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 386 | 50.31 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 415 | 50.38 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 434 | 50.41 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 448 | 50.42 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 458 | 50.44 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 487 | 50.50 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 490 | 50.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 499 | 50.51 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 18 |
| 510 | 50.54 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 514 | 50.54 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 519 | 50.55 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 528 | 50.56 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 534 | 50.56 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 537 | 50.56 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 603 | 50.65 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 8 |
| 669 | 50.72 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 696 | 50.76 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 783 | 50.85 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 6 |
| 786 | 50.85 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 796 | 50.87 | temperature | 20.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 808 | 50.88 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 827 | 50.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 6 |
| 844 | 50.90 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 22 |
| 894 | 50.95 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 895 | 50.96 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 899 | 50.96 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 12 |
| 908 | 50.97 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 926 | 50.98 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 947 | 51.01 | temperature | 20.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 958 | 51.02 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 993 | 51.05 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 1 |