Os09g0477900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NusB/RsmB/TIM44 domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0477900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : NusB/RsmB/TIM44 domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 254.14 | 0.749 | 4.75 | -2.06 | 1.32 | -2.86 | -1.26 | 1.08 | -0.249 | 19 | 24.1 | 859 | -- | -- |
| 255.3 | 0.744 | 4.73 | -1.87 | 1.31 | -2.92 | -1.47 | -- | -0.203 | 19 | 23.85 | 852 | -- | -- |
| 257.81 | 0.748 | 4.76 | -2.08 | 1.3 | -2.79 | -- | 1.45 | -0.252 | 19.1 | 24 | 827 | -- | -- |
| 260.03 | 0.751 | 4.72 | -1.87 | 1.31 | -3.07 | -- | -- | -0.196 | 19.1 | 23.61 | 851 | -- | -- |
| 312.31 | 0.823 | 4.8 | -2.48 | -- | -3.35 | -- | 2.91 | -0.543 | -- | 28.92 | 582 | -- | -- |
| 380.65 | 0.915 | 4.61 | -1.06 | 1.52 | -- | -1.35 | -- | 0.354 | 19.8 | -- | -- | -- | -- |
| 385.86 | 0.92 | 4.61 | -1.03 | 1.51 | -- | -- | -- | 0.352 | 19.9 | -- | -- | -- | -- |
| 327.36 | 0.843 | 4.73 | -1.95 | -- | -3.27 | -- | -- | -0.372 | -- | 27.78 | 610 | -- | -- |
| 340.01 | 0.859 | 4.66 | -- | 1.3 | -2.15 | -- | -- | 0.128 | 19.3 | 23.83 | 760 | -- | -- |
| 510.37 | 1.06 | 4.57 | -1.04 | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
| 413.7 | 0.951 | 4.58 | -- | 1.52 | -- | -- | -- | 0.467 | 19.8 | -- | -- | -- | -- |
| 414.45 | 0.948 | 4.65 | -- | -- | -2.57 | -- | -- | -0.000342 | -- | 29.25 | 548 | -- | -- |
| 539.17 | 1.08 | 4.55 | -- | -- | -- | -- | -- | 0.447 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 253.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 35 | 257.76 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 38 | 258.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 39 | 258.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 55 | 259.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 58 | 259.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 60 | 259.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 74 | 260.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 81 | 260.63 | temperature | 25 | 720 | < th | dose dependent | sin | 1 | NA |
| 108 | 262.57 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 20 |
| 137 | 264.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 14 |
| 148 | 264.72 | temperature | 25 | 1440 | < th | dose dependent | sin | 18 | NA |
| 210 | 266.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 261 | 268.25 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 18 |
| 387 | 270.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 389 | 270.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 390 | 270.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 14 |
| 411 | 271.03 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 20 |
| 483 | 272.09 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 23 |
| 594 | 273.70 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 608 | 273.85 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 23 |
| 611 | 273.89 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 23 |
| 630 | 274.07 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 634 | 274.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 649 | 274.38 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 23 |
| 681 | 274.83 | temperature | 20 | 720 | < th | dose independent | rect. | 13 | 23 |
| 791 | 276.28 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 23 |
| 807 | 276.58 | temperature | 20 | 720 | < th | dose independent | sin | 0 | NA |
| 892 | 277.61 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 895 | 277.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 20 |