BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0212600 Os02g0212600|Os02g0212600
         (249 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0212600  Conserved hypothetical protein                      466   e-132
Os02g0213400  Conserved hypothetical protein                      187   5e-48

>Os02g0212600 Conserved hypothetical protein
          Length = 249

 Score =  466 bits (1200), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/249 (91%), Positives = 227/249 (91%)

Query: 1   MWQRKFRRLDVPRFGIFWCFTYIGSKVVIPILRPSGVVILSEFDVYAVVGEQVLDRQADQ 60
           MWQRKFRRLDVPRFGIFWCFTYIGSKVVIPILRPSGVVILSEFDVYAVVGEQVLDRQADQ
Sbjct: 1   MWQRKFRRLDVPRFGIFWCFTYIGSKVVIPILRPSGVVILSEFDVYAVVGEQVLDRQADQ 60

Query: 61  LRSVSQKYENANKLWAAAISNLENKIKVMKQEQTLLSLEAHGHANAVPELSKMVGAVQAL 120
           LRSVSQKYENANKLWAAAISNLENKIKVMKQEQTLLSLEAHGHANAVPELSKMVGAVQAL
Sbjct: 61  LRSVSQKYENANKLWAAAISNLENKIKVMKQEQTLLSLEAHGHANAVPELSKMVGAVQAL 120

Query: 121 VVQCEDLKLKYYEEMPKRKKLHNIVEETKGAGLQGAVVLSNSMNMGCSHGLPVLXXXXXX 180
           VVQCEDLKLKYYEEMPKRKKLHNIVEETKGAGLQGAVVLSNSMNMGCSHGLPVL      
Sbjct: 121 VVQCEDLKLKYYEEMPKRKKLHNIVEETKGAGLQGAVVLSNSMNMGCSHGLPVLARASAG 180

Query: 181 XXXXXXXXXXXXXXXXQLSLLPRDDHDCCSHSGAHDLQGSECELTTWSATKQTTRVTESA 240
                           QLSLLPRDDHDCCSHSGAHDLQGSECELTTWSATKQTTRVTESA
Sbjct: 181 TAGLAAARGAGAVGRAQLSLLPRDDHDCCSHSGAHDLQGSECELTTWSATKQTTRVTESA 240

Query: 241 TKQHIILAF 249
           TKQHIILAF
Sbjct: 241 TKQHIILAF 249



>Os02g0213400 Conserved hypothetical protein
          Length = 201

 Score =  187 bits (476), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 93/107 (86%), Positives = 97/107 (90%)

Query: 43  FDVYAVVGEQVLDRQADQLRSVSQKYENANKLWAAAISNLENKIKVMKQEQTLLSLEAHG 102
           +     + EQVLDRQADQLRSVSQKY+NANKLWAAAISNLENKIKVMKQEQT+LSLEAHG
Sbjct: 21  YSKTVAIAEQVLDRQADQLRSVSQKYDNANKLWAAAISNLENKIKVMKQEQTMLSLEAHG 80

Query: 103 HANAVPELSKMVGAVQALVVQCEDLKLKYYEEMPKRKKLHNIVEETK 149
           HANAVPELSKMVGAVQALVVQCEDLKLKYYEEM KRKKLHNIV   K
Sbjct: 81  HANAVPELSKMVGAVQALVVQCEDLKLKYYEEMAKRKKLHNIVGRPK 127



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,056,720
Number of extensions: 236546
Number of successful extensions: 679
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 151
Effective length of database: 11,918,829
Effective search space: 1799743179
Effective search space used: 1799743179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)