Os02g0213400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0213400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.57 | 0.454 | 7.61 | -2.55 | 1.55 | 0.577 | -0.148 | 1.53 | -0.0293 | 4.75 | 63 | 5860 | -- | -- |
| 95.97 | 0.456 | 7.61 | -2.59 | 1.55 | 0.684 | -0.0826 | -- | -0.00843 | 4.77 | 66 | 5918 | -- | -- |
| 92.62 | 0.448 | 7.6 | -2.59 | 1.55 | 0.609 | -- | 1.55 | 0.00288 | 4.71 | 66 | 5904 | -- | -- |
| 95.4 | 0.455 | 7.59 | -2.57 | 1.51 | 0.739 | -- | -- | 0.0935 | 4.74 | 70 | 5969 | -- | -- |
| 180.28 | 0.629 | 7.62 | -2.42 | -- | 0.683 | -- | 0.144 | 0.0584 | -- | 73.02 | 6299 | -- | -- |
| 102.64 | 0.475 | 7.61 | -2.53 | 1.54 | -- | -0.199 | -- | 0.0127 | 4.76 | -- | -- | -- | -- |
| 102.75 | 0.475 | 7.61 | -2.53 | 1.54 | -- | -- | -- | 0.0137 | 4.76 | -- | -- | -- | -- |
| 176.48 | 0.621 | 7.62 | -2.42 | -- | 0.695 | -- | -- | 0.074 | -- | 74.29 | 4798 | -- | -- |
| 211.78 | 0.678 | 7.58 | -- | 1.49 | 1.52 | -- | -- | 0.211 | 4.75 | 35 | 5598 | -- | -- |
| 227.79 | 0.705 | 7.62 | -2.48 | -- | -- | -- | -- | 0.0537 | -- | -- | -- | -- | -- |
| 271.85 | 0.771 | 7.55 | -- | 1.49 | -- | -- | -- | 0.296 | 4.81 | -- | -- | -- | -- |
| 329.82 | 0.846 | 7.59 | -- | -- | 1.54 | -- | -- | 0.211 | -- | 36.31 | 5663 | -- | -- |
| 389.4 | 0.921 | 7.56 | -- | -- | -- | -- | -- | 0.328 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.50 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 2 | 89.50 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 3 | 89.60 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 4 | 89.60 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 5 | 89.67 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 6 | 89.75 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 7 | 89.89 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 3 |
| 8 | 89.90 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 11 | 90.11 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 12 | 90.11 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 3 |
| 25 | 90.60 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 26 | 90.63 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 36 | 90.69 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 39 | 90.75 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 49 | 90.84 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 56 | 90.89 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 9 |
| 66 | 90.96 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 83 | 91.03 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 7 |
| 94 | 91.07 | wind | 3.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 98 | 91.08 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 14 |
| 101 | 91.08 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 102 | 91.08 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 14 |
| 104 | 91.09 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 14 |
| 106 | 91.09 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 14 |
| 116 | 91.13 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 119 | 91.13 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 125 | 91.16 | wind | 3.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 134 | 91.20 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 136 | 91.20 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 169 | 91.30 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 10 |
| 185 | 91.34 | wind | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 199 | 91.36 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 202 | 91.37 | wind | 3.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 215 | 91.41 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 21 | 3 |
| 218 | 91.41 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 234 | 91.44 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 256 | 91.48 | wind | 1.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 269 | 91.52 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 290 | 91.58 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 301 | 91.60 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 302 | 91.60 | wind | 3.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 303 | 91.60 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 316 | 91.62 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 321 | 91.64 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 369 | 91.70 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 17 |
| 370 | 91.70 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 16 | 14 |
| 373 | 91.71 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 19 |
| 397 | 91.74 | wind | 3.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 398 | 91.74 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 19 |
| 406 | 91.74 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 19 |
| 408 | 91.75 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 17 |
| 415 | 91.75 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 17 |
| 427 | 91.78 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 434 | 91.79 | temperature | 25.0 | 90 | < th | dose dependent | sin | 14 | NA |
| 447 | 91.81 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 13 | 17 |
| 476 | 91.86 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 484 | 91.88 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 487 | 91.88 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 508 | 91.92 | wind | 3.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 536 | 91.97 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 631 | 92.07 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 18 | 22 |
| 654 | 92.10 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 2 | NA |
| 677 | 92.11 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 2 | NA |
| 678 | 92.11 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 2 | NA |
| 679 | 92.11 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 10 | 2 |
| 690 | 92.13 | wind | 3.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 717 | 92.15 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 728 | 92.16 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 3 | NA |
| 758 | 92.18 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 0 | NA |
| 760 | 92.18 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 10 | 2 |
| 809 | 92.24 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 832 | 92.27 | humidity | 60.0 | 14400 | < th | dose dependent | no | NA | NA |
| 965 | 92.29 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 977 | 92.29 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 17 |