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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0212600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0635) R2 : 0.249
β1 : 1.94 (0.469) R2dD : 0.381 R2D : -0.806
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.39 (0.392) R2dE : 0.269 R2E : -0.769
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 19.7 (3.07) R2dD*E : 1.5 R2D*E : -0.242
γ1 : -0.0748 (0.0783) R2dN8 : 0.00218 R2N8 : -0.193
σ : 0.665
deviance : 203.71
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 31.9
memory length : 4220
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
201.79 0.667 3.2 1.88 0.177 -1.34 -0.102 19.5 -0.0709 11 32 4310 -- --
246.53 0.731 3.64 -1.37 0.0766 0.655 -0.162 -- -0.524 13.9 25.1 47520 -- --
201.83 0.662 3.2 1.89 0.177 -1.35 -- 19.6 -0.0721 11.2 32 4309 -- --
239.79 0.726 3.62 -0.888 0.149 0.469 -- -- -0.414 5.06 23.51 47520 -- --
203.71 0.665 3.2 1.94 -- -1.39 -- 19.7 -0.0748 -- 31.9 4220 -- --
255.2 0.749 3.57 -0.69 0.142 -- -0.255 -- -0.219 9.16 -- -- -- --
255.43 0.748 3.57 -0.699 0.143 -- -- -- -0.219 9.31 -- -- -- --
240.92 0.726 3.62 -0.875 -- 0.45 -- -- -0.403 -- 23.51 47520 -- --
259.38 0.754 3.58 -- 0.119 0.344 -- -- -0.269 6.42 23.51 47520 -- --
256.61 0.749 3.57 -0.699 -- -- -- -- -0.219 -- -- -- -- --
268.29 0.766 3.55 -- 0.143 -- -- -- -0.141 9.67 -- -- -- --
260.11 0.754 3.58 -- -- 0.339 -- -- -0.265 -- 23.51 47520 -- --
269.51 0.766 3.56 -- -- -- -- -- -0.141 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 198.16 temperature 25 4320 > th dose dependent rect. 6 1
2 198.32 temperature 30 4320 < th dose independent rect. 2 8
5 198.39 temperature 30 4320 < th dose independent rect. 22 13
11 198.45 temperature 30 4320 > th dose independent rect. 8 4
26 198.48 temperature 30 4320 < th dose independent rect. 8 3
31 198.50 temperature 30 4320 < th dose independent rect. 5 6
73 199.05 temperature 30 4320 > th dose dependent rect. 11 1
76 199.18 temperature 30 4320 > th dose dependent rect. 8 4
115 199.73 temperature 30 4320 < th dose independent rect. 17 19
118 199.94 temperature 25 4320 > th dose dependent rect. 24 8
165 200.64 temperature 30 4320 > th dose independent sin 9 NA
166 200.74 temperature 30 4320 > th dose dependent sin 8 NA
168 200.87 temperature 30 4320 < th dose independent sin 9 NA
170 200.93 temperature 25 4320 > th dose dependent rect. 3 4
287 203.43 temperature 30 4320 < th dose independent rect. 17 1
389 205.30 temperature 30 4320 > th dose dependent no NA NA
497 205.37 temperature 30 4320 > th dose independent rect. 17 1
729 207.43 temperature 30 4320 < th dose independent rect. 17 14
772 207.64 temperature 30 4320 < th dose independent rect. 17 11
787 207.90 temperature 30 4320 < th dose independent rect. 17 6
876 208.88 humidity 50 14400 < th dose dependent rect. 16 19
931 209.47 temperature 25 4320 > th dose independent rect. 3 1
960 209.79 temperature 25 4320 > th dose dependent rect. 22 4
972 209.91 atmosphere 1000 270 < th dose independent rect. 17 21
974 209.97 humidity 50 14400 < th dose dependent rect. 17 17
975 209.98 temperature 30 4320 > th dose independent rect. 8 10