BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0212600 Os02g0212600|Os02g0212600
         (249 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22610.1  | chr2:9599550-9604626 FORWARD LENGTH=1084           115   2e-26

>AT2G22610.1 | chr2:9599550-9604626 FORWARD LENGTH=1084
          Length = 1083

 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 75/100 (75%)

Query: 51  EQVLDRQADQLRSVSQKYENANKLWAAAISNLENKIKVMKQEQTLLSLEAHGHANAVPEL 110
           +Q +  QAD L+S+++KYEN  + WA AI +L+ KI++MK+EQ+ LS EAH     +PEL
Sbjct: 317 DQTVITQADCLKSITRKYENDKRHWATAIDSLQEKIEIMKREQSQLSQEAHECVEGIPEL 376

Query: 111 SKMVGAVQALVVQCEDLKLKYYEEMPKRKKLHNIVEETKG 150
            KMVG VQALV QCEDLK KY EE  KRK+L+N ++ETKG
Sbjct: 377 YKMVGGVQALVSQCEDLKQKYSEEQAKRKELYNHIQETKG 416



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,541,537
Number of extensions: 156722
Number of successful extensions: 531
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 532
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 153
Effective length of database: 8,474,633
Effective search space: 1296618849
Effective search space used: 1296618849
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)