BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0198200 Os02g0198200|AK058544
(228 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0198200 EF-Hand type domain containing protein 445 e-125
Os06g0609600 EF-Hand type domain containing protein 368 e-102
>Os02g0198200 EF-Hand type domain containing protein
Length = 228
Score = 445 bits (1145), Expect = e-125, Method: Compositional matrix adjust.
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 1 MGGIVGRGDSPRHTSPASKLERKMVEAMQQRAQKGTSVKSFNSVIMKFPKIDESLRNCRI 60
MGGIVGRGDSPRHTSPASKLERKMVEAMQQRAQKGTSVKSFNSVIMKFPKIDESLRNCRI
Sbjct: 1 MGGIVGRGDSPRHTSPASKLERKMVEAMQQRAQKGTSVKSFNSVIMKFPKIDESLRNCRI 60
Query: 61 IFQQFDEDSNGEIDQQELKHCFQKLDISFTDEEIKDLFQACDIYENMGMKFNEFIVFLCL 120
IFQQFDEDSNGEIDQQELKHCFQKLDISFTDEEIKDLFQACDIYENMGMKFNEFIVFLCL
Sbjct: 61 IFQQFDEDSNGEIDQQELKHCFQKLDISFTDEEIKDLFQACDIYENMGMKFNEFIVFLCL 120
Query: 121 VYLLNDPLVSEARKRMGLGSLEPTFETLVDSFVFLDKNKDGYVSKNEMIQAINETIGGER 180
VYLLNDPLVSEARKRMGLGSLEPTFETLVDSFVFLDKNKDGYVSKNEMIQAINETIGGER
Sbjct: 121 VYLLNDPLVSEARKRMGLGSLEPTFETLVDSFVFLDKNKDGYVSKNEMIQAINETIGGER 180
Query: 181 SSGRIGMKRFEEMDWDKNGTVTFKEFLFAFTRWVGI 216
SSGRIGMKRFEEMDWDKNGTVTFKEFLFAFTRWVGI
Sbjct: 181 SSGRIGMKRFEEMDWDKNGTVTFKEFLFAFTRWVGI 216
>Os06g0609600 EF-Hand type domain containing protein
Length = 224
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 173/216 (80%), Positives = 197/216 (91%)
Query: 1 MGGIVGRGDSPRHTSPASKLERKMVEAMQQRAQKGTSVKSFNSVIMKFPKIDESLRNCRI 60
MGGI+GR D+ + +S SKLE KMVE+MQQRA GTS+KSF+S+IMKFPKIDESLR C+I
Sbjct: 1 MGGILGRHDTMKRSSHGSKLETKMVESMQQRASHGTSLKSFDSIIMKFPKIDESLRKCKI 60
Query: 61 IFQQFDEDSNGEIDQQELKHCFQKLDISFTDEEIKDLFQACDIYENMGMKFNEFIVFLCL 120
IF+QFDEDSNGEID+QELKHCFQKL+ISFT+EEI DLF+ACDI E+MGMKFNEFIVFLCL
Sbjct: 61 IFEQFDEDSNGEIDKQELKHCFQKLEISFTEEEINDLFEACDINEDMGMKFNEFIVFLCL 120
Query: 121 VYLLNDPLVSEARKRMGLGSLEPTFETLVDSFVFLDKNKDGYVSKNEMIQAINETIGGER 180
+YLLN+P VSEA+ +MGLG+LE TFETLVD+FVFLDKNKDGYVSK EM+Q++NET GER
Sbjct: 121 IYLLNEPAVSEAKIKMGLGNLEATFETLVDAFVFLDKNKDGYVSKEEMVQSMNETATGER 180
Query: 181 SSGRIGMKRFEEMDWDKNGTVTFKEFLFAFTRWVGI 216
SSGRI MKRFEEMDWDKNG VTFKEFLFAFTRWVGI
Sbjct: 181 SSGRIAMKRFEEMDWDKNGMVTFKEFLFAFTRWVGI 216
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,976,058
Number of extensions: 268404
Number of successful extensions: 926
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 946
Number of HSP's successfully gapped: 2
Length of query: 228
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 131
Effective length of database: 11,971,043
Effective search space: 1568206633
Effective search space used: 1568206633
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)