Os02g0198200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EF-Hand type domain containing protein.
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Os02g0198200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EF-Hand type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.3 | 0.524 | 8.52 | -2.44 | 2.07 | 2.11 | 0.32 | -4.7 | 0.254 | 7.06 | 14.39 | 1116 | -- | -- |
| 141.31 | 0.554 | 8.41 | -1.8 | 2.08 | 2 | 0.424 | -- | 0.468 | 6.76 | 10.59 | 5180 | -- | -- |
| 124.43 | 0.52 | 8.52 | -2.42 | 2.13 | 2.14 | -- | -4.78 | 0.26 | 7.1 | 14.2 | 1052 | -- | -- |
| 141.82 | 0.555 | 8.41 | -1.79 | 2.06 | 2.01 | -- | -- | 0.471 | 6.75 | 3.244 | 5193 | -- | -- |
| 330.47 | 0.847 | 8.57 | -2.44 | -- | 2.2 | -- | -4.4 | 0.261 | -- | 13.88 | 1344 | -- | -- |
| 209.06 | 0.678 | 8.32 | -0.852 | 2.04 | -- | 0.373 | -- | 0.87 | 6.55 | -- | -- | -- | -- |
| 209.41 | 0.678 | 8.32 | -0.847 | 2.04 | -- | -- | -- | 0.869 | 6.54 | -- | -- | -- | -- |
| 346.83 | 0.867 | 8.45 | -1.48 | -- | 2.15 | -- | -- | 0.516 | -- | 7.789 | 1358 | -- | -- |
| 192.04 | 0.645 | 8.34 | -- | 2.03 | 1.42 | -- | -- | 0.767 | 6.95 | 9.779 | 1144 | -- | -- |
| 426.3 | 0.965 | 8.36 | -0.797 | -- | -- | -- | -- | 0.911 | -- | -- | -- | -- | -- |
| 228.31 | 0.707 | 8.3 | -- | 2.03 | -- | -- | -- | 0.963 | 6.56 | -- | -- | -- | -- |
| 396.61 | 0.928 | 8.39 | -- | -- | 1.53 | -- | -- | 0.772 | -- | 10.82 | 1349 | -- | -- |
| 443.03 | 0.982 | 8.34 | -- | -- | -- | -- | -- | 0.999 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.89 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 2 | 120.99 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 3 | 121.23 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 4 | 121.39 | radiation | 30 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 6 | 121.41 | radiation | 30 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 7 | 121.41 | radiation | 30 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 14 | 121.44 | radiation | 30 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 15 | 121.44 | radiation | 30 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 19 | 121.75 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 21 | 121.91 | wind | 9 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 23 | 121.92 | radiation | 10 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 33 | 122.00 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 43 | 122.17 | humidity | 50 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 46 | 122.20 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 56 | 122.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 20 |
| 58 | 122.46 | humidity | 60 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 64 | 122.64 | radiation | 1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 76 | 122.71 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 110 | 123.18 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 112 | 123.25 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 118 | 123.38 | humidity | 60 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 125 | 123.55 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 160 | 123.66 | radiation | 10 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 161 | 123.68 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 162 | 123.69 | humidity | 50 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 164 | 123.73 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 170 | 123.78 | humidity | 50 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 174 | 123.82 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 184 | 123.89 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 19 |
| 185 | 123.90 | radiation | 40 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 205 | 123.96 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 208 | 123.99 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 6 |
| 210 | 124.00 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 21 |
| 211 | 124.01 | humidity | 70 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 212 | 124.01 | humidity | 60 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 219 | 124.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 19 |
| 229 | 124.14 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 256 | 124.18 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 261 | 124.21 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 11 |
| 267 | 124.21 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 22 |
| 284 | 124.30 | humidity | 50 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 305 | 124.41 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 346 | 124.55 | humidity | 50 | 43200 | > th | dose independent | rect. | 10 | 13 |
| 433 | 124.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 473 | 124.73 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 482 | 124.74 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 493 | 124.75 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 500 | 124.75 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 504 | 124.76 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 557 | 124.86 | humidity | 50 | 43200 | > th | dose independent | sin | 0 | NA |
| 586 | 124.92 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 632 | 125.02 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 21 |
| 639 | 125.04 | humidity | 50 | 43200 | < th | dose dependent | sin | 22 | NA |
| 662 | 125.09 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 666 | 125.09 | temperature | 10 | 1440 | > th | dose dependent | sin | 16 | NA |
| 677 | 125.10 | humidity | 50 | 43200 | < th | dose dependent | rect. | 5 | 12 |
| 686 | 125.11 | humidity | 50 | 43200 | < th | dose independent | rect. | 10 | 12 |
| 702 | 125.12 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 780 | 125.19 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 783 | 125.19 | humidity | 50 | 43200 | < th | dose dependent | rect. | 5 | 17 |
| 826 | 125.23 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 828 | 125.23 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 851 | 125.24 | humidity | 60 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 879 | 125.25 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 18 |
| 916 | 125.28 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 987 | 125.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 992 | 125.35 | humidity | 60 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 996 | 125.35 | humidity | 70 | 43200 | < th | dose dependent | rect. | 17 | 1 |