BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0197800 Os02g0197800|AK061372
         (141 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0197800  Protein of unknown function DUF971 family protein   268   9e-73
Os01g0904300  Protein of unknown function DUF971 family protein   194   2e-50

>Os02g0197800 Protein of unknown function DUF971 family protein
          Length = 141

 Score =  268 bits (685), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 13  LHAAQAQAQPPRLTKLALRAPKFVEVEFEDGSSFHLPAEFLRVYSPAADSKIRSVAGEKV 72
           LHAAQAQAQPPRLTKLALRAPKFVEVEFEDGSSFHLPAEFLRVYSPAADSKIRSVAGEKV
Sbjct: 13  LHAAQAQAQPPRLTKLALRAPKFVEVEFEDGSSFHLPAEFLRVYSPAADSKIRSVAGEKV 72

Query: 73  IFGRRHVGIMSAESVGNYGVRILFDDLHKTGIFTWDYLHHLGSNKFGLMRSYITTLKKHG 132
           IFGRRHVGIMSAESVGNYGVRILFDDLHKTGIFTWDYLHHLGSNKFGLMRSYITTLKKHG
Sbjct: 73  IFGRRHVGIMSAESVGNYGVRILFDDLHKTGIFTWDYLHHLGSNKFGLMRSYITTLKKHG 132

Query: 133 LTRDPQRRK 141
           LTRDPQRRK
Sbjct: 133 LTRDPQRRK 141



>Os01g0904300 Protein of unknown function DUF971 family protein
          Length = 116

 Score =  194 bits (493), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/106 (86%), Positives = 99/106 (93%)

Query: 36  VEVEFEDGSSFHLPAEFLRVYSPAADSKIRSVAGEKVIFGRRHVGIMSAESVGNYGVRIL 95
           VEVEF DGSSFHL AEFLRV+SPAADSKI SV+GEKVIFGRR+VGIMSAESVGNYG+RIL
Sbjct: 11  VEVEFTDGSSFHLSAEFLRVHSPAADSKIISVSGEKVIFGRRYVGIMSAESVGNYGIRIL 70

Query: 96  FDDLHKTGIFTWDYLHHLGSNKFGLMRSYITTLKKHGLTRDPQRRK 141
           FDDLHKTGIFTWDYLHHLGS KF L R+YI TL+KHGL+RDPQRRK
Sbjct: 71  FDDLHKTGIFTWDYLHHLGSKKFSLTRNYIRTLRKHGLSRDPQRRK 116



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,435,650
Number of extensions: 164874
Number of successful extensions: 317
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 2
Length of query: 141
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 50
Effective length of database: 12,284,327
Effective search space: 614216350
Effective search space used: 614216350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 151 (62.8 bits)