Os01g0904300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF971 family protein.
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Os01g0904300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF971 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.37 | 0.475 | 10 | -0.177 | 1.41 | 0.548 | 1.43 | 1.97 | 0.117 | 8.55 | 47.07 | 45 | -- | -- |
| 109.77 | 0.492 | 10 | -0.194 | 1.39 | 0.46 | 0.437 | -- | 0.0931 | 8.38 | 47.07 | 45 | -- | -- |
| 106.74 | 0.481 | 10 | -0.137 | 1.39 | 0.654 | -- | 1.36 | 0.12 | 8.57 | 231.4 | 48 | -- | -- |
| 110.31 | 0.492 | 10 | -0.178 | 1.4 | 0.497 | -- | -- | 0.0937 | 8.5 | 47.07 | 45 | -- | -- |
| 139.53 | 0.55 | 10 | -0.147 | -- | 1.23 | -- | 0.894 | 0.222 | -- | 292 | 797 | -- | -- |
| 113.28 | 0.499 | 10 | -0.219 | 1.24 | -- | 0.799 | -- | 0.0923 | 7.51 | -- | -- | -- | -- |
| 114.92 | 0.502 | 10 | -0.198 | 1.24 | -- | -- | -- | 0.0921 | 7.65 | -- | -- | -- | -- |
| 132.82 | 0.537 | 10 | -0.544 | -- | 1.41 | -- | -- | 0.236 | -- | 6.852 | 876 | -- | -- |
| 111.15 | 0.494 | 10 | -- | 1.41 | 0.507 | -- | -- | 0.114 | 8.52 | 47.07 | 45 | -- | -- |
| 197.56 | 0.657 | 10.1 | -0.182 | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
| 115.96 | 0.504 | 10 | -- | 1.24 | -- | -- | -- | 0.114 | 7.66 | -- | -- | -- | -- |
| 125.06 | 0.521 | 10 | -- | -- | 1.66 | -- | -- | 0.2 | -- | 3.192 | 932 | -- | -- |
| 198.43 | 0.658 | 10.1 | -- | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.12 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 3 | 93.58 | radiation | 40.0 | 30 | < th | dose dependent | sin | 8 | NA |
| 22 | 95.15 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 15 |
| 27 | 95.44 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 15 | 9 |
| 30 | 95.46 | radiation | 20.0 | 30 | < th | dose independent | sin | 9 | NA |
| 40 | 95.99 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 15 | 9 |
| 47 | 96.25 | humidity | 60.0 | 270 | > th | dose independent | rect. | 24 | 15 |
| 58 | 96.60 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 17 |
| 87 | 97.35 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 90 | 97.37 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 92 | 97.38 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 1 | 12 |
| 94 | 97.40 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 95 | 97.42 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 129 | 97.75 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 10 |
| 131 | 97.75 | radiation | 1.0 | 30 | > th | dose dependent | sin | 8 | NA |
| 132 | 97.76 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 22 | 7 |
| 133 | 97.76 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 7 |
| 149 | 97.92 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 15 |
| 156 | 97.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 9 |
| 157 | 97.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 15 |
| 160 | 97.97 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 15 |
| 163 | 97.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 171 | 98.01 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 9 |
| 180 | 98.05 | radiation | 40.0 | 270 | < th | dose independent | rect. | 24 | 15 |
| 191 | 98.09 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 9 |
| 192 | 98.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 9 |
| 195 | 98.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 9 |
| 198 | 98.12 | wind | 1.0 | 270 | > th | dose independent | rect. | 24 | 15 |
| 202 | 98.15 | radiation | 20.0 | 10 | < th | dose independent | rect. | 24 | 8 |
| 205 | 98.18 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 15 |
| 212 | 98.21 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 9 |
| 225 | 98.25 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 238 | 98.29 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 15 |
| 239 | 98.29 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 15 |
| 249 | 98.33 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 269 | 98.39 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 18 |
| 293 | 98.49 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 18 |
| 297 | 98.51 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 303 | 98.52 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 6 | 5 |
| 318 | 98.56 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 328 | 98.60 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 17 |
| 329 | 98.61 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 335 | 98.62 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 345 | 98.64 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 9 |
| 371 | 98.69 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 407 | 98.73 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 487 | 98.82 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 16 |
| 528 | 98.88 | radiation | 30.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 559 | 98.89 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 562 | 98.90 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 6 |
| 563 | 98.90 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 564 | 98.90 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 6 |
| 567 | 98.90 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 6 |
| 584 | 98.91 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 608 | 98.95 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 634 | 98.97 | radiation | 30.0 | 43200 | > th | dose independent | no | NA | NA |
| 762 | 98.99 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 783 | 99.00 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 18 |
| 787 | 99.00 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 825 | 99.02 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 859 | 99.05 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 860 | 99.05 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 903 | 99.13 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 10 | 7 |