BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0904300 Os01g0904300|AK065762
         (116 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G27340.1  | chr3:10121303-10122692 FORWARD LENGTH=142          164   6e-42

>AT3G27340.1 | chr3:10121303-10122692 FORWARD LENGTH=142
          Length = 141

 Score =  164 bits (416), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 89/108 (82%)

Query: 5   IYCSSQVEVEFTDGSSFHLSAEFLRVHSPAADSKIISVSGEKVIFGRRYVGIMSAESVGN 64
           I    QVEVE+ DG+ F+ S+EFLR+HSPAAD K+ S+ GEKVI GRRYVGIMSAE VGN
Sbjct: 28  IVSPKQVEVEYADGTKFNFSSEFLRIHSPAADGKVRSIGGEKVISGRRYVGIMSAEPVGN 87

Query: 65  YGIRILFDDLHKTGIFTWDYLHHLGSKKFSLTRNYIRTLRKHGLSRDP 112
           YG+R++FDDLH+TGI+ WDY + LGS KF L RNYI+TL+KH LSR+P
Sbjct: 88  YGVRLVFDDLHRTGIYPWDYFYELGSNKFGLMRNYIKTLQKHNLSREP 135



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,447,417
Number of extensions: 89695
Number of successful extensions: 198
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 31
Effective length of database: 8,776,209
Effective search space: 272062479
Effective search space used: 272062479
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)