BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0197700 Os02g0197700|AK065498
(240 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0197700 Conserved hypothetical protein 470 e-133
Os03g0197000 Conserved hypothetical protein 283 1e-76
>Os02g0197700 Conserved hypothetical protein
Length = 240
Score = 470 bits (1209), Expect = e-133, Method: Compositional matrix adjust.
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 14 VHLVISFFGSLSHLKNDLECYLISFKLLPKYRNLHLERLAYLGVVVDSREAKNALKVKQL 73
VHLVISFFGSLSHLKNDLECYLISFKLLPKYRNLHLERLAYLGVVVDSREAKNALKVKQL
Sbjct: 14 VHLVISFFGSLSHLKNDLECYLISFKLLPKYRNLHLERLAYLGVVVDSREAKNALKVKQL 73
Query: 74 LRWFSTIGINYLILYDIEGVLKELIQPGIETSTDGNPINSLDVVADTKASCYRHGGMFME 133
LRWFSTIGINYLILYDIEGVLKELIQPGIETSTDGNPINSLDVVADTKASCYRHGGMFME
Sbjct: 74 LRWFSTIGINYLILYDIEGVLKELIQPGIETSTDGNPINSLDVVADTKASCYRHGGMFME 133
Query: 134 CLSSSDGKEAIAKVANLLYSTCCNSDNKSEIAFTEADMTHALKAVGTGGPEPDLLLVYGP 193
CLSSSDGKEAIAKVANLLYSTCCNSDNKSEIAFTEADMTHALKAVGTGGPEPDLLLVYGP
Sbjct: 134 CLSSSDGKEAIAKVANLLYSTCCNSDNKSEIAFTEADMTHALKAVGTGGPEPDLLLVYGP 193
Query: 194 GRFHLGFPAWRLRYTEIMYVGPLESMKYGTIVKALYRFSRKYQNYGK 240
GRFHLGFPAWRLRYTEIMYVGPLESMKYGTIVKALYRFSRKYQNYGK
Sbjct: 194 GRFHLGFPAWRLRYTEIMYVGPLESMKYGTIVKALYRFSRKYQNYGK 240
>Os03g0197000 Conserved hypothetical protein
Length = 252
Score = 283 bits (723), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 141/231 (61%), Positives = 166/231 (71%), Gaps = 4/231 (1%)
Query: 14 VHLVISFFGSLSHLKNDLECYLISFKLLPKYRNLHLERLAYLGVVVDSREAKNALKVKQL 73
VHL IS L +ECYLISF L+PKYR L+RL +L VVVDSREAKN K+ QL
Sbjct: 22 VHLAISLCSLWFDLIYSIECYLISFGLIPKYRKFQLDRLKHLAVVVDSREAKNVAKINQL 81
Query: 74 LRWFSTIGINYLILYDIEGVLKELIQPGIETSTDGNPINSLDVVADTKASCYRHGGMFME 133
L W S +G+ Y+ LYDI+GVLK+ P + S GN LDV A+TKA H M +E
Sbjct: 82 LCWLSNVGVKYVCLYDIDGVLKKTFAPAMNGSRYGNSGKYLDVGANTKALTCCHKEMTIE 141
Query: 134 CLSSSDGKEAIAKVANLLYSTCCNSDNKS----EIAFTEADMTHALKAVGTGGPEPDLLL 189
C+S SDGK+ IAK A+LL STC N + + EI FTEADM+ ALKA+G GGPEPDLLL
Sbjct: 142 CISGSDGKDGIAKAASLLCSTCVNGNRNTCGNGEIVFTEADMSGALKAIGCGGPEPDLLL 201
Query: 190 VYGPGRFHLGFPAWRLRYTEIMYVGPLESMKYGTIVKALYRFSRKYQNYGK 240
VYGP R HLGFPAWRLRYTEIM++GPL SMKYG IVKA Y+FS+KYQN+GK
Sbjct: 202 VYGPARCHLGFPAWRLRYTEIMHMGPLNSMKYGAIVKAFYKFSKKYQNFGK 252
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,692,582
Number of extensions: 313386
Number of successful extensions: 596
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 2
Length of query: 240
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 142
Effective length of database: 11,918,829
Effective search space: 1692473718
Effective search space used: 1692473718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)