BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0194800 Os02g0194800|AK120869
(579 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0194800 Cyclase-associated protein domain containing p... 1002 0.0
Os06g0614300 Cyclase-associated protein domain containing p... 803 0.0
>Os02g0194800 Cyclase-associated protein domain containing protein
Length = 579
Score = 1002 bits (2590), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/541 (90%), Positives = 491/541 (90%)
Query: 39 EAFEHGLLPIPKLIFPEGTLAHTLAQVKDKLXXXXXXXXXXXXXXXXXXLQIPHEQXXXX 98
EAFEHGLLPIPKLIFPEGTLAHTLAQVKDKL LQIPHEQ
Sbjct: 39 EAFEHGLLPIPKLIFPEGTLAHTLAQVKDKLASAADGGGRVAAAALAEALQIPHEQAALA 98
Query: 99 XXXXXXXXXXXXXXXXSGGGGRADLRDVLLFLYIQSYKRLVPRAHKDSPAVTDVWPSTSA 158
SGGGGRADLRDVLLFLYIQSYKRLVPRAHKDSPAVTDVWPSTSA
Sbjct: 99 LATLAAVLPADDPALDSGGGGRADLRDVLLFLYIQSYKRLVPRAHKDSPAVTDVWPSTSA 158
Query: 159 FDGYLSALSPIQLVRSNSRRFMPSQADEEIHQLSYLQKHMANILTLLADSVEGEGDDSLV 218
FDGYLSALSPIQLVRSNSRRFMPSQADEEIHQLSYLQKHMANILTLLADSVEGEGDDSLV
Sbjct: 159 FDGYLSALSPIQLVRSNSRRFMPSQADEEIHQLSYLQKHMANILTLLADSVEGEGDDSLV 218
Query: 219 LTMETFEHLGFLLKFSEGTPLSQAATFFANSXXXXXXXXXXXXQVHDWISQNISASLEFS 278
LTMETFEHLGFLLKFSEGTPLSQAATFFANS QVHDWISQNISASLEFS
Sbjct: 219 LTMETFEHLGFLLKFSEGTPLSQAATFFANSDPDMPAAPVPAAQVHDWISQNISASLEFS 278
Query: 279 TEKSISKEVSQQVTSDIDVTMADANASNARNSTPTGTNPAYYRNTTFVEGFSKTSVVKHA 338
TEKSISKEVSQQVTSDIDVTMADANASNARNSTPTGTNPAYYRNTTFVEGFSKTSVVKHA
Sbjct: 279 TEKSISKEVSQQVTSDIDVTMADANASNARNSTPTGTNPAYYRNTTFVEGFSKTSVVKHA 338
Query: 339 SDVKGHSVKVLNCHESVIYILAPLKYATVYGCSDATVVLGAIGKVVKVEHCERVHIIAAA 398
SDVKGHSVKVLNCHESVIYILAPLKYATVYGCSDATVVLGAIGKVVKVEHCERVHIIAAA
Sbjct: 339 SDVKGHSVKVLNCHESVIYILAPLKYATVYGCSDATVVLGAIGKVVKVEHCERVHIIAAA 398
Query: 399 KWICIANCRECIFYLGVNHQPLIVGDNHKLQVAPFNTYYPQLGEHLAKVGVDPAINKWDQ 458
KWICIANCRECIFYLGVNHQPLIVGDNHKLQVAPFNTYYPQLGEHLAKVGVDPAINKWDQ
Sbjct: 399 KWICIANCRECIFYLGVNHQPLIVGDNHKLQVAPFNTYYPQLGEHLAKVGVDPAINKWDQ 458
Query: 459 PFVLGVVDPHDSLSHPAGVSDVQAESAARLDPDLFTNFMIPSWFGTEVQEPTKCCPFPLP 518
PFVLGVVDPHDSLSHPAGVSDVQAESAARLDPDLFTNFMIPSWFGTEVQEPTKCCPFPLP
Sbjct: 459 PFVLGVVDPHDSLSHPAGVSDVQAESAARLDPDLFTNFMIPSWFGTEVQEPTKCCPFPLP 518
Query: 519 EIYCASQSKKLAALEDIRRTIRELQIDDNRKKELTNALHAQFKDWLYASGNIRQLYCLQG 578
EIYCASQSKKLAALEDIRRTIRELQIDDNRKKELTNALHAQFKDWLYASGNIRQLYCLQG
Sbjct: 519 EIYCASQSKKLAALEDIRRTIRELQIDDNRKKELTNALHAQFKDWLYASGNIRQLYCLQG 578
Query: 579 D 579
D
Sbjct: 579 D 579
>Os06g0614300 Cyclase-associated protein domain containing protein
Length = 581
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/552 (73%), Positives = 438/552 (79%), Gaps = 21/552 (3%)
Query: 40 AFEHGLLPIPKLIFPEGTLAHTLAQVKDKLXXXX------XXXXXXXXXXXXXXLQIPHE 93
AFEHGLLPIPKL+FPEGTL TLAQ K++L LQIP E
Sbjct: 39 AFEHGLLPIPKLVFPEGTLTQTLAQTKERLIAAAGGDGDASAAPRVGAAALAEALQIPRE 98
Query: 94 QXXXXXXXXXXXXXXXXXXXXSGGGGRADLRDVLLFLYIQSYKRLVPRAHKDSPAVTDVW 153
ADLRDVLLFLYIQSYKRLVPRAHKDSPAVTDVW
Sbjct: 99 LAALVLGTLAAVLPAEEEAED------ADLRDVLLFLYIQSYKRLVPRAHKDSPAVTDVW 152
Query: 154 PSTSAFDGYLSALSPIQLVRSNSRRFMPSQADEEIHQLSYLQKHMANILTLLADSVEGEG 213
PSTSAFDGYLSALSPIQLVRSNSRRFMPSQADEE HQLSYLQKHM NIL+LLADSV+GEG
Sbjct: 153 PSTSAFDGYLSALSPIQLVRSNSRRFMPSQADEEAHQLSYLQKHMVNILSLLADSVDGEG 212
Query: 214 DDSLVLTMETFEHLGFLLKFSEGTPLSQAATFFANSXXXXXXXXXXXXQVHDWISQNISA 273
D+S+VLT ETFEHLGFL +FSEGTPLSQ ATFFANS QVHDWI QNI+A
Sbjct: 213 DESMVLTAETFEHLGFLFQFSEGTPLSQVATFFANSDPDMPAAPVPAAQVHDWILQNIAA 272
Query: 274 SLEFSTEKSISKEVSQQVTSDIDVTMADANASNAR--NSTPTGT----NPAYYRNTTFVE 327
SLE + EK +KE SQQ SD DVTMA+A +N+R +S+PTGT N +YRNTTF+E
Sbjct: 273 SLENTAEKLTAKENSQQSASDPDVTMAEA-VTNSRIHSSSPTGTAVPNNQGHYRNTTFLE 331
Query: 328 GFSKTSVVKHASDVKGHSVKVLNCHESVIYILAPLKYATVYGCSDATVVLGAIGKVVKVE 387
GFSKTSVVK ASD+KGHS+KVLNCH+SVIYILAP+KYATVYGCSD T+VLGA+GKVVKVE
Sbjct: 332 GFSKTSVVKQASDIKGHSIKVLNCHDSVIYILAPVKYATVYGCSDTTIVLGAVGKVVKVE 391
Query: 388 HCERVHIIAAAKWICIANCRECIFYLGVNHQPLIVGDNHKLQVAPFNTYYPQLGEHLAKV 447
HCERV IIAA+K ICIANCRECIFYLGVNHQPLIVGDNHKLQVAPFNTYYPQLGEHL +V
Sbjct: 392 HCERVQIIAASKRICIANCRECIFYLGVNHQPLIVGDNHKLQVAPFNTYYPQLGEHLVQV 451
Query: 448 GVDPAINKWDQPFVLGVVDPHDSLSHPAGVSDVQAESAARLDPDLFTNFMIPSWFGTEVQ 507
GVD INKWDQPFVLGVVDPHDSLSHPAGVSDVQAESA LDPDLFTNF+IPSWF E Q
Sbjct: 452 GVDSNINKWDQPFVLGVVDPHDSLSHPAGVSDVQAESATCLDPDLFTNFLIPSWF--EAQ 509
Query: 508 EPTKCCPFPLPEIYCASQSKKLAALEDIRRTIRELQIDDNRKKELTNALHAQFKDWLYAS 567
PTK PF LPE+Y ASQ KK +LEDI++ IREL++DD RKKEL +ALHAQFKDWLYAS
Sbjct: 510 GPTKYNPFTLPEVYWASQRKKHVSLEDIQKNIRELELDDTRKKELASALHAQFKDWLYAS 569
Query: 568 GNIRQLYCLQGD 579
GNIRQLYCLQG+
Sbjct: 570 GNIRQLYCLQGE 581
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,662,818
Number of extensions: 649829
Number of successful extensions: 1490
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1487
Number of HSP's successfully gapped: 2
Length of query: 579
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 473
Effective length of database: 11,501,117
Effective search space: 5440028341
Effective search space used: 5440028341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)