Os06g0614300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclase-associated protein domain containing protein.
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Os06g0614300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclase-associated protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.26 | 0.346 | 8.31 | 0.716 | 0.987 | 0.731 | -0.236 | 0.444 | 0.135 | 23.7 | 20.2 | 2234 | -- | -- |
| 54.64 | 0.344 | 8.31 | 0.644 | 0.993 | 0.657 | -0.178 | -- | 0.124 | 23.7 | 20.2 | 2258 | -- | -- |
| 54.49 | 0.344 | 8.31 | 0.714 | 0.987 | 0.725 | -- | 0.386 | 0.133 | 23.7 | 20.2 | 2248 | -- | -- |
| 54.76 | 0.345 | 8.32 | 0.643 | 0.989 | 0.667 | -- | -- | 0.115 | 23.7 | 20.36 | 2278 | -- | -- |
| 114.35 | 0.498 | 8.3 | 0.659 | -- | 0.972 | -- | 0.606 | 0.0882 | -- | 20.3 | 2354 | -- | -- |
| 63.79 | 0.374 | 8.29 | 0.954 | 1.04 | -- | -0.208 | -- | 0.276 | 23.7 | -- | -- | -- | -- |
| 63.97 | 0.375 | 8.29 | 0.962 | 1.04 | -- | -- | -- | 0.277 | 23.7 | -- | -- | -- | -- |
| 112.52 | 0.494 | 8.34 | 0.752 | -- | 0.824 | -- | -- | 0.0259 | -- | 24.9 | 2384 | -- | -- |
| 62.75 | 0.369 | 8.35 | -- | 0.974 | 1 | -- | -- | -0.00667 | 23.6 | 19.87 | 2416 | -- | -- |
| 131.66 | 0.536 | 8.26 | 0.992 | -- | -- | -- | -- | 0.289 | -- | -- | -- | -- | -- |
| 88.38 | 0.44 | 8.31 | -- | 1.05 | -- | -- | -- | 0.17 | 23.7 | -- | -- | -- | -- |
| 121.35 | 0.513 | 8.33 | -- | -- | 1.15 | -- | -- | 0.0111 | -- | 19.92 | 2353 | -- | -- |
| 157.62 | 0.586 | 8.29 | -- | -- | -- | -- | -- | 0.179 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.49 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 5 | 49.82 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 6 | 49.93 | temperature | 20.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 12 | 50.14 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 25 | 50.71 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 43 | 51.13 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 17 |
| 50 | 51.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 59 | 51.46 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 74 | 51.68 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 9 |
| 77 | 51.70 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 83 | 51.80 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 87 | 51.87 | humidity | 80.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 103 | 52.02 | temperature | 20.0 | 10 | > th | dose independent | rect. | 14 | 21 |
| 124 | 52.15 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 129 | 52.18 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 139 | 52.25 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 9 |
| 195 | 52.60 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 197 | 52.63 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 201 | 52.65 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 203 | 52.66 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 17 |
| 233 | 52.80 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 252 | 52.87 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 6 |
| 253 | 52.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 17 |
| 269 | 52.94 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 271 | 52.95 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 283 | 53.00 | radiation | 30.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 291 | 53.05 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 293 | 53.05 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 294 | 53.05 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 296 | 53.05 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 297 | 53.05 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 298 | 53.05 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 17 |
| 301 | 53.06 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 306 | 53.07 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 308 | 53.07 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 309 | 53.07 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 310 | 53.07 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 317 | 53.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 7 |
| 319 | 53.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 332 | 53.19 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 6 |
| 333 | 53.19 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 17 |
| 336 | 53.20 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 338 | 53.20 | humidity | 70.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 345 | 53.23 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 17 |
| 349 | 53.24 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 350 | 53.24 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 369 | 53.30 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 17 |
| 371 | 53.30 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 386 | 53.35 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 21 |
| 387 | 53.36 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 392 | 53.37 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 400 | 53.40 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 402 | 53.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 7 |
| 404 | 53.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 407 | 53.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 17 |
| 409 | 53.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 440 | 53.49 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 458 | 53.53 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 499 | 53.61 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 521 | 53.65 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 17 |
| 534 | 53.68 | radiation | 1.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 535 | 53.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 15 |
| 538 | 53.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 15 |
| 588 | 53.75 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 13 | 7 |
| 598 | 53.76 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 7 |
| 610 | 53.78 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 611 | 53.78 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 612 | 53.78 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 624 | 53.81 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 642 | 53.84 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 651 | 53.86 | temperature | 20.0 | 10 | > th | dose independent | rect. | 15 | 7 |
| 653 | 53.86 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 661 | 53.87 | wind | 1.0 | 90 | > th | dose independent | rect. | 9 | 6 |
| 664 | 53.87 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 669 | 53.88 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 680 | 53.89 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 704 | 53.93 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 12 | 8 |
| 705 | 53.93 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 706 | 53.93 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 707 | 53.93 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 720 | 53.95 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 6 |
| 739 | 53.96 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 759 | 53.99 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 761 | 53.99 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 769 | 54.00 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 8 |
| 775 | 54.00 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 8 |
| 799 | 54.03 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 23 |
| 807 | 54.04 | temperature | 10.0 | 90 | > th | dose independent | rect. | 9 | 6 |
| 808 | 54.04 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 9 | 6 |
| 809 | 54.04 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 16 |
| 818 | 54.05 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 6 |
| 819 | 54.05 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 8 |
| 822 | 54.05 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 6 |
| 836 | 54.07 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 838 | 54.07 | radiation | 20.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 841 | 54.07 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 842 | 54.07 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 846 | 54.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 8 |
| 847 | 54.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 862 | 54.10 | wind | 1.0 | 270 | > th | dose independent | rect. | 20 | 17 |
| 914 | 54.15 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 917 | 54.16 | wind | 1.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 927 | 54.17 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 17 |
| 928 | 54.17 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 933 | 54.18 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 983 | 54.24 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 991 | 54.25 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 7 |