BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0182500 Os02g0182500|AF358768
         (47 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0182500  Similar to Proteasome subunit beta type 3 (EC ...    98   1e-21
Os06g0643100  Proteasome subunit beta type 3 (EC 3.4.25.1) (...    92   7e-20

>Os02g0182500 Similar to Proteasome subunit beta type 3 (EC 3.4.25.1) (20S
          proteasome alpha subunit C) (20S proteasome subunit
          beta-3)
          Length = 47

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/47 (100%), Positives = 47/47 (100%)

Query: 1  EPEELFETISQALQASVDRDCLSGWGGYVLLVTPTEVQERVIKGRMD 47
          EPEELFETISQALQASVDRDCLSGWGGYVLLVTPTEVQERVIKGRMD
Sbjct: 1  EPEELFETISQALQASVDRDCLSGWGGYVLLVTPTEVQERVIKGRMD 47



>Os06g0643100 Proteasome subunit beta type 3 (EC 3.4.25.1) (20S proteasome alpha
           subunit C) (20S proteasome subunit beta-3)
          Length = 204

 Score = 92.4 bits (228), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 43/47 (91%), Positives = 46/47 (97%)

Query: 1   EPEELFETISQALQASVDRDCLSGWGGYVLLVTPTEVQERVIKGRMD 47
           EPEELFETISQALQ+SVDRDCLSGWGG+VLLVTPTEV+E VIKGRMD
Sbjct: 158 EPEELFETISQALQSSVDRDCLSGWGGFVLLVTPTEVKECVIKGRMD 204



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,427,412
Number of extensions: 31373
Number of successful extensions: 65
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 47
Length of database: 17,035,801
Length adjustment: 20
Effective length of query: 27
Effective length of database: 15,991,521
Effective search space: 431771067
Effective search space used: 431771067
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)