Os06g0643100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Proteasome subunit beta type 3 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit beta-3).
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Os06g0643100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Proteasome subunit beta type 3 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit beta-3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.86 | 0.199 | 12.3 | -0.0351 | 0.097 | 0.648 | 0.247 | 0.481 | 0.0507 | 14.3 | 24 | 472 | -- | -- |
| 18.12 | 0.198 | 12.3 | 0.0298 | 0.0972 | 0.583 | 0.24 | -- | 0.0668 | 14.2 | 24.4 | 472 | -- | -- |
| 18.07 | 0.198 | 12.3 | -0.0236 | 0.0946 | 0.641 | -- | 0.45 | 0.0543 | 14.9 | 24.1 | 491 | -- | -- |
| 18.31 | 0.199 | 12.3 | 0.0417 | 0.1 | 0.582 | -- | -- | 0.0701 | 14.7 | 24.39 | 464 | -- | -- |
| 18.47 | 0.2 | 12.3 | -0.0322 | -- | 0.624 | -- | 0.479 | 0.0518 | -- | 24.21 | 627 | -- | -- |
| 22.94 | 0.225 | 12.3 | -0.116 | 0.0971 | -- | 0.238 | -- | -0.0425 | 12.3 | -- | -- | -- | -- |
| 23.18 | 0.225 | 12.3 | -0.107 | 0.0964 | -- | -- | -- | -0.0413 | 12.4 | -- | -- | -- | -- |
| 18.76 | 0.202 | 12.3 | 0.041 | -- | 0.563 | -- | -- | 0.067 | -- | 24.4 | 577 | -- | -- |
| 18.35 | 0.2 | 12.3 | -- | 0.0975 | 0.572 | -- | -- | 0.0637 | 14.5 | 24.4 | 464 | -- | -- |
| 23.77 | 0.228 | 12.3 | -0.11 | -- | -- | -- | -- | -0.0429 | -- | -- | -- | -- | -- |
| 23.48 | 0.227 | 12.3 | -- | 0.0979 | -- | -- | -- | -0.0294 | 12.5 | -- | -- | -- | -- |
| 18.8 | 0.202 | 12.3 | -- | -- | 0.554 | -- | -- | 0.0598 | -- | 24.4 | 563 | -- | -- |
| 24.08 | 0.229 | 12.3 | -- | -- | -- | -- | -- | -0.0307 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.94 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 21 |
| 3 | 18.10 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 18 |
| 5 | 18.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 20 | 18.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 22 |
| 41 | 18.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 50 | 18.30 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 67 | 18.32 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 76 | 18.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 97 | 18.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 14 |
| 106 | 18.39 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 19 |
| 161 | 18.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 166 | 18.51 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 21 |
| 198 | 18.56 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 18 |
| 222 | 18.59 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 23 |
| 230 | 18.60 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 21 |
| 248 | 18.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 7 |
| 268 | 18.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 308 | 18.67 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 317 | 18.68 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 342 | 18.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 346 | 18.70 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 15 |
| 359 | 18.71 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 368 | 18.72 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 373 | 18.72 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 393 | 18.74 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 407 | 18.75 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 430 | 18.77 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 13 |
| 505 | 18.83 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 11 |
| 516 | 18.83 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 563 | 18.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 573 | 18.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 603 | 18.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 622 | 18.89 | temperature | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 739 | 18.93 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 755 | 18.94 | temperature | 20 | 720 | > th | dose independent | sin | 13 | NA |
| 784 | 18.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 18 |