BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0177700 Os02g0177700|AK119941
         (195 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0177700  Protein of unknown function DUF588 family protein   316   7e-87
Os06g0656300  Protein of unknown function DUF588 family protein   124   6e-29

>Os02g0177700 Protein of unknown function DUF588 family protein
          Length = 195

 Score =  316 bits (809), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 163/186 (87%), Positives = 163/186 (87%)

Query: 10  VPGVVRAERLLRGGCVVMAATAALLLGFSAETKTVLFVRKTAVAKDXXXXXXXXXXXXXX 69
           VPGVVRAERLLRGGCVVMAATAALLLGFSAETKTVLFVRKTAVAKD              
Sbjct: 10  VPGVVRAERLLRGGCVVMAATAALLLGFSAETKTVLFVRKTAVAKDVQALWVLTVAAAAA 69

Query: 70  XXXXXXXXXRCMYCSSSGDAGAMAVAWTSFLLDKGCAYVVFASTAAALQACMVGLIGVEA 129
                    RCMYCSSSGDAGAMAVAWTSFLLDKGCAYVVFASTAAALQACMVGLIGVEA
Sbjct: 70  AGYQFAQLVRCMYCSSSGDAGAMAVAWTSFLLDKGCAYVVFASTAAALQACMVGLIGVEA 129

Query: 130 LQWSKLCNIYTRFCEQAAAGMLCSFLAAAGMAVLSAFSARRLFRLYSPAGHRRSCPRAAV 189
           LQWSKLCNIYTRFCEQAAAGMLCSFLAAAGMAVLSAFSARRLFRLYSPAGHRRSCPRAAV
Sbjct: 130 LQWSKLCNIYTRFCEQAAAGMLCSFLAAAGMAVLSAFSARRLFRLYSPAGHRRSCPRAAV 189

Query: 190 LATSPH 195
           LATSPH
Sbjct: 190 LATSPH 195



>Os06g0656300 Protein of unknown function DUF588 family protein
          Length = 194

 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 71/142 (50%), Positives = 84/142 (59%), Gaps = 4/142 (2%)

Query: 38  SAETKTVLFVRKTAVAKDXXXXXXXXXXXXXXXXXXXXXXXRCMYCSSSGDAGA----MA 93
           + +T+TVLF+RK A  KD                       RC Y S   D        A
Sbjct: 40  NTQTETVLFIRKKATVKDVQALWVLAMAAAAAAGYHLLQLLRCFYLSRFADGKPCRHRRA 99

Query: 94  VAWTSFLLDKGCAYVVFASTAAALQACMVGLIGVEALQWSKLCNIYTRFCEQAAAGMLCS 153
           +AW  FLLDKGCAY+ FA+T AA QAC+V L G  ALQW+KLCNIYTRFCEQ A  ++C+
Sbjct: 100 IAWLCFLLDKGCAYITFATTVAAAQACVVALYGTHALQWTKLCNIYTRFCEQVAGSLVCA 159

Query: 154 FLAAAGMAVLSAFSARRLFRLY 175
            LAA G A+LS  SAR LFRLY
Sbjct: 160 MLAAVGTALLSVVSARNLFRLY 181



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,160,155
Number of extensions: 166761
Number of successful extensions: 733
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 731
Number of HSP's successfully gapped: 3
Length of query: 195
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 100
Effective length of database: 12,075,471
Effective search space: 1207547100
Effective search space used: 1207547100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 153 (63.5 bits)