BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0163600 Os02g0163600|AK068043
         (167 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0163600  Conserved hypothetical protein                      293   3e-80
Os02g0163300  Conserved hypothetical protein                      121   2e-28

>Os02g0163600 Conserved hypothetical protein
          Length = 167

 Score =  293 bits (751), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/167 (88%), Positives = 147/167 (88%)

Query: 1   MASPLRRLRSWRVSRGXXXXXXXXXXXXXXXXXXXXLHRLLPLARAVHSSLPPSRYGDPR 60
           MASPLRRLRSWRVSRG                    LHRLLPLARAVHSSLPPSRYGDPR
Sbjct: 1   MASPLRRLRSWRVSRGATSPCSTSAASMAAARTTNTLHRLLPLARAVHSSLPPSRYGDPR 60

Query: 61  SPPQARRPSGEVELSKLEKTPSDRFDEIEAAIHANLVNDIEAYKSSLMADHGFFERMLTS 120
           SPPQARRPSGEVELSKLEKTPSDRFDEIEAAIHANLVNDIEAYKSSLMADHGFFERMLTS
Sbjct: 61  SPPQARRPSGEVELSKLEKTPSDRFDEIEAAIHANLVNDIEAYKSSLMADHGFFERMLTS 120

Query: 121 MGIKKSYTRDQTLWLCKLILIFFASGSVGIGFAKIDDRLKQAPSNAL 167
           MGIKKSYTRDQTLWLCKLILIFFASGSVGIGFAKIDDRLKQAPSNAL
Sbjct: 121 MGIKKSYTRDQTLWLCKLILIFFASGSVGIGFAKIDDRLKQAPSNAL 167



>Os02g0163300 Conserved hypothetical protein
          Length = 145

 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 80/125 (64%), Gaps = 10/125 (8%)

Query: 39  RLLPLARAVHSSLPPSRYGDPRSPPQARRPSGEVELSKLE--KTPSDRFDEIEAAIHANL 96
           RLLP A        P R G   S P+  R    +ELS+ E  +  + RFDEIE A+HA L
Sbjct: 27  RLLPAA--------PLRRGVLSSQPRPSRRKDSIELSRSEEGRRLAGRFDEIEDAVHAIL 78

Query: 97  VNDIEAYKSSLMADHGFFERMLTSMGIKKSYTRDQTLWLCKLILIFFASGSVGIGFAKID 156
           + DIE+Y++S MAD GF ER LTS+G  K YTRDQ LWL KL+L FF+S  VG GFAKID
Sbjct: 79  IRDIESYRASTMADQGFVERRLTSLGFTKGYTRDQALWLSKLVLAFFSSWVVGTGFAKID 138

Query: 157 DRLKQ 161
           D L Q
Sbjct: 139 DSLHQ 143



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,394,056
Number of extensions: 196363
Number of successful extensions: 1029
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1028
Number of HSP's successfully gapped: 2
Length of query: 167
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 74
Effective length of database: 12,179,899
Effective search space: 901312526
Effective search space used: 901312526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)