FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0163300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.73 (0.0637) R2 : 0.665
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.947 (0.165) R2dC : 0.0166 R2C : -0.119
β3 : 2.05 (0.212) R2dE : 0.0784 R2E : 0.0747
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 3.37 (0.139) R2dN8 : 0.586 R2N8 : 0.572
σ : 1.18
deviance : 644.15
__
_____
C
peak time of C : 18.1
E
wheather : temperature
threshold : 19.15
memory length : 14205
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
632.44 1.18 5.61 1.52 0.796 1.72 1.02 1.31 3.66 18 20.11 1473 -- --
633.15 1.17 5.64 1.24 0.754 1.52 1.04 -- 3.62 17.7 20.1 2189 -- --
634.98 1.17 5.61 1.51 0.803 1.74 -- 1.29 3.66 18 20.1 1478 -- --
635.6 1.17 5.65 1.19 0.767 1.55 -- -- 3.58 17.6 20.2 2208 -- --
663.87 1.2 5.59 1.44 -- 1.75 -- 1.31 3.62 -- 20.3 1948 -- --
681.2 1.22 5.57 1.93 0.774 -- 1.24 -- 3.93 18.2 -- -- -- --
684.96 1.23 5.57 1.92 0.78 -- -- -- 3.94 18.2 -- -- -- --
665.42 1.2 5.63 1.18 -- 1.57 -- -- 3.57 -- 20.16 1981 -- --
644.15 1.18 5.73 -- 0.947 2.05 -- -- 3.37 18.1 19.15 14205 -- --
716.49 1.25 5.55 1.9 -- -- -- -- 3.92 -- -- -- -- --
782.03 1.31 5.62 -- 0.753 -- -- -- 3.72 18.3 -- -- -- --
668.42 1.2 5.67 -- -- 2.12 -- -- 3.39 -- 17.3 18231 -- --
811.44 1.33 5.6 -- -- -- -- -- 3.71 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 618.04 wind 9 14400 > th dose independent rect. 10 1
4 620.98 wind 9 14400 < th dose independent rect. 8 3
5 621.07 wind 9 14400 < th dose independent rect. 10 1
7 622.42 wind 9 14400 > th dose dependent rect. 9 4
10 622.56 wind 9 14400 > th dose dependent rect. 3 7
14 622.75 temperature 20 14400 > th dose independent rect. 9 3
18 623.01 temperature 20 14400 < th dose independent rect. 9 3
22 623.08 wind 3 43200 < th dose independent rect. 21 3
25 623.11 temperature 20 14400 < th dose independent rect. 11 1
54 624.35 wind 7 14400 > th dose dependent rect. 7 2
60 624.52 wind 3 43200 < th dose independent rect. 19 7
67 624.78 wind 3 43200 > th dose independent rect. 21 3
71 624.90 wind 3 43200 > th dose independent rect. 19 8
94 625.44 wind 9 14400 > th dose independent rect. 1 9
95 625.44 wind 5 43200 < th dose dependent rect. 23 3
99 625.55 wind 3 43200 < th dose dependent rect. 21 6
104 625.69 wind 3 43200 < th dose dependent rect. 6 1
110 625.90 wind 3 43200 < th dose dependent rect. 10 3
127 626.27 temperature 20 14400 < th dose dependent rect. 8 1
137 626.38 wind 7 14400 > th dose independent rect. 3 7
151 626.67 wind 7 14400 > th dose independent rect. 4 5
154 626.69 wind 3 43200 < th dose dependent rect. 10 1
159 626.79 temperature 20 14400 < th dose dependent rect. 6 12
169 626.96 wind 7 14400 > th dose dependent rect. 10 1
170 626.96 wind 1 43200 < th dose dependent rect. 9 5
174 627.05 wind 3 43200 < th dose dependent rect. 12 1
181 627.15 wind 3 43200 < th dose dependent rect. 5 4
182 627.15 temperature 20 14400 < th dose dependent rect. 6 5
202 627.33 wind 1 4320 > th dose independent rect. 3 4
209 627.44 wind 7 14400 < th dose independent rect. 24 10
217 627.51 wind 9 43200 > th dose dependent rect. 10 7
224 627.55 wind 7 14400 > th dose independent rect. 22 12
226 627.56 wind 7 14400 < th dose independent rect. 3 7
233 627.58 temperature 20 1440 > th dose independent rect. 1 17
239 627.68 temperature 20 1440 < th dose independent rect. 1 18
242 627.69 wind 1 4320 < th dose dependent rect. 3 4
259 627.85 wind 7 14400 < th dose independent rect. 4 5
265 627.90 wind 1 43200 > th dose dependent rect. 22 4
266 627.90 wind 3 43200 < th dose dependent rect. 20 11
276 627.97 wind 3 43200 < th dose independent rect. 10 3
296 628.17 wind 3 43200 < th dose dependent rect. 20 19
328 628.40 wind 1 43200 > th dose independent rect. 9 5
333 628.42 wind 7 14400 < th dose independent rect. 22 12
338 628.46 wind 1 4320 < th dose independent rect. 3 4
350 628.52 wind 9 43200 > th dose independent rect. 9 5
356 628.55 wind 1 43200 > th dose independent rect. 23 14
364 628.61 wind 3 43200 < th dose dependent sin 12 NA
384 628.74 wind 1 4320 < th dose independent rect. 3 2
386 628.75 wind 3 43200 < th dose independent rect. 12 1
395 628.79 temperature 20 14400 < th dose dependent rect. 10 1
420 628.88 temperature 20 14400 < th dose dependent sin 23 NA
434 628.95 temperature 20 1440 < th dose independent sin 3 NA
443 628.98 temperature 20 1440 > th dose independent sin 3 NA
445 629.00 wind 3 43200 < th dose independent rect. 1 1
453 629.06 wind 3 43200 > th dose independent rect. 1 1
494 629.21 wind 1 4320 > th dose independent rect. 3 2
525 629.38 wind 3 43200 < th dose dependent rect. 5 9
545 629.48 wind 1 43200 < th dose dependent rect. 24 14
584 629.63 wind 7 14400 < th dose independent rect. 24 6
585 629.63 wind 7 14400 > th dose dependent rect. 24 5
589 629.64 wind 1 43200 < th dose dependent rect. 24 17
590 629.64 humidity 60 90 < th dose dependent rect. 17 18
600 629.69 temperature 15 270 > th dose dependent rect. 18 19
604 629.72 wind 7 14400 > th dose independent rect. 24 5
637 629.83 temperature 15 14400 > th dose independent rect. 3 4
639 629.84 wind 9 43200 > th dose independent rect. 7 10
649 629.88 wind 1 43200 > th dose independent rect. 4 11
666 629.94 wind 3 43200 < th dose dependent rect. 9 22
677 629.96 temperature 20 14400 < th dose dependent rect. 15 1
689 629.99 wind 3 43200 < th dose dependent rect. 4 23
707 630.04 temperature 20 14400 < th dose dependent rect. 14 4
717 630.07 wind 7 14400 > th dose dependent rect. 3 2
721 630.09 wind 3 43200 > th dose independent rect. 12 1
734 630.13 wind 3 43200 < th dose independent sin 13 NA
745 630.16 temperature 15 14400 < th dose independent rect. 4 1
746 630.16 wind 3 43200 < th dose dependent rect. 12 19
750 630.17 wind 3 43200 < th dose dependent rect. 12 23
772 630.22 wind 3 43200 < th dose independent rect. 19 20
773 630.22 wind 3 43200 < th dose dependent no NA NA
778 630.23 wind 9 14400 > th dose dependent rect. 20 17
804 630.30 wind 1 43200 < th dose independent rect. 23 15
837 630.36 wind 9 43200 < th dose dependent rect. 1 1
854 630.40 wind 1 14400 > th dose independent rect. 6 2
862 630.41 wind 3 43200 < th dose dependent rect. 1 23
863 630.42 wind 3 43200 > th dose independent sin 13 NA
868 630.44 wind 1 43200 > th dose independent sin 5 NA
874 630.45 wind 3 43200 < th dose independent rect. 6 21
877 630.47 wind 1 14400 > th dose independent rect. 23 9
921 630.55 wind 9 43200 > th dose independent rect. 1 16
935 630.58 atmosphere 995 270 > th dose dependent rect. 22 21
962 630.66 wind 9 14400 > th dose dependent rect. 19 19
998 630.74 wind 3 43200 > th dose independent rect. 19 20