Os02g0163600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0163600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.62 | 0.242 | 11 | -0.694 | 0.413 | -0.693 | 0.263 | -1.12 | -0.0562 | 23.8 | 25.7 | 114 | -- | -- |
| 28.28 | 0.248 | 11 | -0.869 | 0.399 | -0.597 | -0.0199 | -- | -0.0872 | 23.4 | 25.71 | 80 | -- | -- |
| 26.86 | 0.241 | 11 | -0.727 | 0.406 | -0.673 | -- | -0.946 | -0.0623 | 23.7 | 25.7 | 123 | -- | -- |
| 28.28 | 0.248 | 11 | -0.865 | 0.407 | -0.597 | -- | -- | -0.0878 | 23.5 | 25.73 | 76 | -- | -- |
| 32.62 | 0.266 | 11 | -0.73 | -- | -0.647 | -- | -0.868 | -0.0616 | -- | 27.48 | 837 | -- | -- |
| 33.37 | 0.271 | 11 | -0.728 | 0.321 | -- | -0.0553 | -- | 0.0353 | 22.5 | -- | -- | -- | -- |
| 33.39 | 0.271 | 11 | -0.726 | 0.321 | -- | -- | -- | 0.0354 | 22.5 | -- | -- | -- | -- |
| 33.49 | 0.27 | 11 | -0.896 | -- | -0.614 | -- | -- | -0.0928 | -- | 28.7 | 832 | -- | -- |
| 46.25 | 0.318 | 11 | -- | 0.357 | -0.249 | -- | -- | 0.0697 | 22.8 | 25.7 | 6 | -- | -- |
| 39.72 | 0.294 | 11 | -0.72 | -- | -- | -- | -- | 0.0368 | -- | -- | -- | -- | -- |
| 47.28 | 0.322 | 11 | -- | 0.317 | -- | -- | -- | 0.116 | 22.4 | -- | -- | -- | -- |
| 52.18 | 0.336 | 11 | -- | -- | -0.255 | -- | -- | 0.0724 | -- | 29.1 | 762 | -- | -- |
| 53.4 | 0.341 | 11 | -- | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.09 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 7 |
| 6 | 26.54 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 7 | 26.57 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 20 |
| 12 | 26.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 13 | 26.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 16 | 26.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 33 | 26.80 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 38 | 26.80 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 39 | 26.81 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 44 | 26.86 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 45 | 26.86 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 47 | 26.88 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 57 | 26.92 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 58 | 26.92 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 59 | 26.93 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 20 |
| 71 | 26.98 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 74 | 26.98 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 79 | 26.99 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 80 | 27.00 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 88 | 27.02 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 89 | 27.02 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 97 | 27.04 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 100 | 27.05 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 114 | 27.07 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 126 | 27.09 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 138 | 27.11 | humidity | 80 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 147 | 27.13 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 158 | 27.14 | humidity | 80 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 159 | 27.14 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 183 | 27.18 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 17 |
| 225 | 27.24 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 13 |
| 236 | 27.25 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 237 | 27.25 | wind | 3 | 14400 | < th | dose dependent | sin | 5 | NA |
| 240 | 27.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 253 | 27.27 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 261 | 27.27 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 290 | 27.31 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 315 | 27.33 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 316 | 27.33 | wind | 3 | 14400 | < th | dose independent | rect. | 23 | 15 |
| 348 | 27.37 | wind | 3 | 14400 | < th | dose independent | sin | 6 | NA |
| 356 | 27.38 | humidity | 90 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 378 | 27.40 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 395 | 27.41 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 467 | 27.46 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 479 | 27.47 | wind | 9 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 482 | 27.47 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 498 | 27.48 | wind | 3 | 14400 | > th | dose independent | rect. | 23 | 15 |
| 539 | 27.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 565 | 27.53 | wind | 3 | 14400 | > th | dose independent | sin | 6 | NA |
| 607 | 27.56 | wind | 9 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 715 | 27.64 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 761 | 27.67 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 803 | 27.70 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 912 | 27.76 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 979 | 27.81 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 2 |