BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0161200 Os02g0161200|AK122103
(426 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0161200 Zinc finger, CCCH-type domain containing protein 784 0.0
Os06g0682800 Zinc finger, CCCH-type domain containing protein 75 7e-14
>Os02g0161200 Zinc finger, CCCH-type domain containing protein
Length = 426
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/426 (91%), Positives = 388/426 (91%)
Query: 1 MLGPPRRGPAYKTKLCALWQRGNCNRDTCSFAHGHGDIRRPPSSRGAFTHHPGRRDYRAG 60
MLGPPRRGPAYKTKLCALWQRGNCNRDTCSFAHGHGDIRRPPSSRGAFTHHPGRRDYRAG
Sbjct: 1 MLGPPRRGPAYKTKLCALWQRGNCNRDTCSFAHGHGDIRRPPSSRGAFTHHPGRRDYRAG 60
Query: 61 DFRGRIDRRFSPRRRHSPGRESRGHRPLXXXXXXXXXXXXXXXXXXXXXXXXXHEKKTDD 120
DFRGRIDRRFSPRRRHSPGRESRGHRPL HEKKTDD
Sbjct: 61 DFRGRIDRRFSPRRRHSPGRESRGHRPLYDRRPSSRERDSSYSRSPSRKSERRHEKKTDD 120
Query: 121 GETXXXXXXXXXXXXXEKKKDKFSSGDEKEDHEKQLKQIRLDMEALRDDKTQMEVILDEK 180
GET EKKKDKFSSGDEKEDHEKQLKQIRLDMEALRDDKTQMEVILDEK
Sbjct: 121 GETNSSRSLSLSDNNDEKKKDKFSSGDEKEDHEKQLKQIRLDMEALRDDKTQMEVILDEK 180
Query: 181 IDEVRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQARFERLG 240
IDEVRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQARFERLG
Sbjct: 181 IDEVRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQARFERLG 240
Query: 241 DLLASDILKRGANEEGSSVNEDLNERSPNTAATKKRSIPYSTSEEAKAVKKRRERDSDTM 300
DLLASDILKRGANEEGSSVNEDLNERSPNTAATKKRSIPYSTSEEAKAVKKRRERDSDTM
Sbjct: 241 DLLASDILKRGANEEGSSVNEDLNERSPNTAATKKRSIPYSTSEEAKAVKKRRERDSDTM 300
Query: 301 TRSDKYRSDVTDFDKTSKGTEATKSLYLKKKLWEDEKSKLGANIFTEKVKGSPVRHVLPS 360
TRSDKYRSDVTDFDKTSKGTEATKSLYLKKKLWEDEKSKLGANIFTEKVKGSPVRHVLPS
Sbjct: 301 TRSDKYRSDVTDFDKTSKGTEATKSLYLKKKLWEDEKSKLGANIFTEKVKGSPVRHVLPS 360
Query: 361 TGMAAHAIDDLNEAIELEDRHESIDALLENDADDKTRSPAIPLQPPPVVQNAYEQYEGDD 420
TGMAAHAIDDLNEAIELEDRHESIDALLENDADDKTRSPAIPLQPPPVVQNAYEQYEGDD
Sbjct: 361 TGMAAHAIDDLNEAIELEDRHESIDALLENDADDKTRSPAIPLQPPPVVQNAYEQYEGDD 420
Query: 421 EEVDVE 426
EEVDVE
Sbjct: 421 EEVDVE 426
>Os06g0682800 Zinc finger, CCCH-type domain containing protein
Length = 91
Score = 75.5 bits (184), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 34/38 (89%)
Query: 1 MLGPPRRGPAYKTKLCALWQRGNCNRDTCSFAHGHGDI 38
M+GPPRRGPAYKTKLCALW++G CNR +CSFAHG ++
Sbjct: 4 MMGPPRRGPAYKTKLCALWRQGECNRASCSFAHGDAEL 41
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,537,248
Number of extensions: 623369
Number of successful extensions: 2428
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2427
Number of HSP's successfully gapped: 2
Length of query: 426
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 322
Effective length of database: 11,605,545
Effective search space: 3736985490
Effective search space used: 3736985490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)