Os02g0161200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
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Os02g0161200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CCCH-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.25 | 0.258 | 11 | -0.0162 | 0.408 | -0.373 | 1 | -0.452 | 0.0813 | 2.31 | 68.8 | 4755 | -- | -- |
| 30.61 | 0.258 | 11 | -0.0334 | 0.404 | -0.397 | 1.04 | -- | 0.0718 | 2.35 | 68.1 | 4749 | -- | -- |
| 33.81 | 0.271 | 11 | -0.0547 | 0.408 | -0.351 | -- | -0.617 | 0.105 | 2.04 | 73 | 4749 | -- | -- |
| 34.25 | 0.273 | 11 | -0.0461 | 0.448 | -0.392 | -- | -- | 0.0771 | 2.19 | 71.41 | 4112 | -- | -- |
| 40.31 | 0.297 | 11 | -0.0435 | -- | -0.526 | -- | -1.01 | 0.114 | -- | 74.81 | 4721 | -- | -- |
| 33.83 | 0.273 | 11 | -0.0513 | 0.42 | -- | 0.981 | -- | 0.136 | 2.48 | -- | -- | -- | -- |
| 37.26 | 0.286 | 11 | -0.0771 | 0.42 | -- | -- | -- | 0.13 | 2.24 | -- | -- | -- | -- |
| 41.73 | 0.302 | 11 | -0.0481 | -- | -0.567 | -- | -- | 0.109 | -- | 74.81 | 4721 | -- | -- |
| 34.3 | 0.273 | 11 | -- | 0.451 | -0.394 | -- | -- | 0.0667 | 2.17 | 70.25 | 4106 | -- | -- |
| 47.79 | 0.323 | 11 | -0.0594 | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
| 37.42 | 0.286 | 11 | -- | 0.419 | -- | -- | -- | 0.139 | 2.24 | -- | -- | -- | -- |
| 41.8 | 0.302 | 11 | -- | -- | -0.569 | -- | -- | 0.114 | -- | 74.81 | 4721 | -- | -- |
| 47.88 | 0.323 | 11 | -- | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.23 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 2 | 29.27 | humidity | 50 | 14400 | > th | dose independent | sin | 14 | NA |
| 3 | 29.27 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 9 |
| 12 | 29.27 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 13 | 29.28 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 19 | 29.29 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 21 | 29.30 | humidity | 50 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 23 | 29.31 | humidity | 50 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 38 | 29.33 | humidity | 50 | 14400 | < th | dose independent | sin | 14 | NA |
| 48 | 29.47 | humidity | 50 | 14400 | < th | dose independent | sin | 10 | NA |
| 49 | 29.48 | humidity | 50 | 14400 | > th | dose independent | sin | 10 | NA |
| 51 | 29.51 | humidity | 80 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 68 | 29.56 | humidity | 70 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 74 | 29.59 | humidity | 80 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 75 | 29.60 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 78 | 29.61 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 21 |
| 82 | 29.63 | humidity | 60 | 14400 | < th | dose dependent | sin | 10 | NA |
| 83 | 29.63 | humidity | 80 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 86 | 29.66 | humidity | 90 | 4320 | < th | dose dependent | rect. | 8 | 2 |
| 87 | 29.66 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 94 | 29.70 | humidity | 60 | 14400 | < th | dose dependent | rect. | 8 | 12 |
| 126 | 29.71 | humidity | 60 | 14400 | < th | dose dependent | sin | 19 | NA |
| 128 | 29.71 | humidity | 60 | 14400 | < th | dose dependent | no | NA | NA |
| 227 | 29.72 | humidity | 60 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 231 | 29.72 | humidity | 60 | 14400 | < th | dose dependent | rect. | 10 | 9 |
| 252 | 29.73 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 8 |
| 297 | 29.74 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 18 |
| 303 | 29.75 | humidity | 70 | 14400 | < th | dose dependent | rect. | 7 | 4 |
| 333 | 29.78 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 338 | 29.79 | humidity | 50 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 340 | 29.79 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 355 | 29.81 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 392 | 29.85 | humidity | 60 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 393 | 29.85 | humidity | 60 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 397 | 29.85 | humidity | 60 | 14400 | > th | dose independent | rect. | 22 | 14 |
| 501 | 29.94 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 589 | 30.00 | humidity | 60 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 653 | 30.03 | humidity | 60 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 659 | 30.04 | humidity | 60 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 782 | 30.09 | humidity | 50 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 785 | 30.09 | humidity | 50 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 790 | 30.10 | humidity | 50 | 14400 | > th | dose independent | no | NA | NA |
| 897 | 30.11 | wind | 1 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 918 | 30.12 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 3 |
| 986 | 30.15 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |