BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0161200 Os02g0161200|AK122103
         (426 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21810.1  | chr3:7684852-7688360 FORWARD LENGTH=438            125   5e-29

>AT3G21810.1 | chr3:7684852-7688360 FORWARD LENGTH=438
          Length = 437

 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 14/242 (5%)

Query: 11  YKTKLCALWQR-GNCNRDTCSFAHGHGDIRRPPSSRGAFTHHPGRRDYRA------GDFR 63
           YKTKLC L+ + G+C+R  C+FAHG+ ++RRP  S      H    D R        D R
Sbjct: 7   YKTKLCILFNKTGDCSRPNCTFAHGNAELRRPGESSFTGRRHNMDSDLRDRRHNMDSDLR 66

Query: 64  GRIDRRFSPRRRHSPGRESRGHRPLXXXXXXXXXXXXXXXXXXXXXXXXXHEKKTDDGET 123
            R+ R+FSP RR  P  +  G R                            E++   G  
Sbjct: 67  DRLGRQFSPERR--PSLDRSGRRVQRFSGHDNSMPFENRRDKDYRENRRFDERRDYAG-- 122

Query: 124 XXXXXXXXXXXXXEKKKDKFSSGDEKEDHEKQLKQIRLDMEALRDDKTQMEVILDEKIDE 183
                        E  ++KF   +     E+QLK + +D++ L DDK ++E  ++ K  E
Sbjct: 123 -GLKVGNRIEDRAEDGRNKFHGYNNV--LEEQLKDVEMDVKMLTDDKLRLEASVERKAHE 179

Query: 184 VRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQARFERLGDLL 243
           V  ++S++ +LE QL REKDEC R+TS  KKF+K + RFL+AQ+++KRS+AR ++LG+ L
Sbjct: 180 VDILTSRIQELETQLDREKDECRRITSSSKKFVKEYNRFLRAQDDLKRSEARLQKLGNQL 239

Query: 244 AS 245
           ++
Sbjct: 240 ST 241



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.130    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,107,703
Number of extensions: 390174
Number of successful extensions: 1936
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1943
Number of HSP's successfully gapped: 4
Length of query: 426
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 325
Effective length of database: 8,337,553
Effective search space: 2709704725
Effective search space used: 2709704725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)