Os06g0682800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
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Os06g0682800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CCCH-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.76 | 0.3 | 9.66 | -0.803 | 0.271 | -0.851 | 0.199 | -0.674 | 0.25 | 0.787 | 19.39 | 6669 | -- | -- |
| 41.26 | 0.299 | 9.68 | -0.851 | 0.28 | -0.685 | 0.18 | -- | 0.245 | 0.48 | 19.09 | 7910 | -- | -- |
| 40.54 | 0.297 | 9.65 | -0.824 | 0.254 | -0.991 | -- | -0.882 | 0.272 | 0.0747 | 18.5 | 6467 | -- | -- |
| 41.26 | 0.299 | 9.68 | -0.831 | 0.271 | -0.649 | -- | -- | 0.244 | 0.395 | 19.3 | 6523 | -- | -- |
| 45.13 | 0.313 | 9.65 | -0.809 | -- | -1.06 | -- | -1.01 | 0.255 | -- | 18.5 | 6692 | -- | -- |
| 47.31 | 0.322 | 9.65 | -0.4 | 0.291 | -- | 0.187 | -- | 0.413 | 0.708 | -- | -- | -- | -- |
| 47.43 | 0.323 | 9.65 | -0.407 | 0.29 | -- | -- | -- | 0.412 | 0.408 | -- | -- | -- | -- |
| 45.98 | 0.316 | 9.68 | -0.855 | -- | -0.685 | -- | -- | 0.237 | -- | 19.3 | 6655 | -- | -- |
| 48.42 | 0.324 | 9.65 | -- | 0.238 | -0.286 | -- | -- | 0.403 | 23.9 | 22.3 | 1041 | -- | -- |
| 52.73 | 0.339 | 9.64 | -0.397 | -- | -- | -- | -- | 0.417 | -- | -- | -- | -- | -- |
| 51.8 | 0.337 | 9.64 | -- | 0.284 | -- | -- | -- | 0.458 | 0.335 | -- | -- | -- | -- |
| 51.57 | 0.334 | 9.65 | -- | -- | -0.331 | -- | -- | 0.361 | -- | 22.21 | 904 | -- | -- |
| 56.89 | 0.352 | 9.63 | -- | -- | -- | -- | -- | 0.461 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.87 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 2 | 38.87 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 3 | 38.95 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 4 | 38.96 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 6 | 39.06 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 8 | 39.13 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 14 | 39.22 | radiation | 20 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 19 | 39.29 | radiation | 30 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 40 | 39.30 | radiation | 40 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 41 | 39.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 17 |
| 45 | 39.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 48 | 39.33 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 69 | 39.42 | radiation | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 166 | 39.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 175 | 39.54 | radiation | 40 | 43200 | > th | dose independent | sin | 17 | NA |
| 185 | 39.55 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 187 | 39.56 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 232 | 39.61 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 3 |
| 389 | 39.69 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 418 | 39.71 | radiation | 20 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 426 | 39.71 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 428 | 39.72 | radiation | 20 | 43200 | > th | dose independent | no | NA | NA |
| 545 | 39.73 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 550 | 39.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 14 |
| 907 | 39.77 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 967 | 39.79 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 6 |